PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004452.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 342aa    MW: 38412.9 Da    PI: 8.7697
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004452.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.4e-11223271247
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                     +rW+ +E++ l  +v+++G g+Wk+I +      + Rt+ ++k++w++ 
  FANhyb_rscf00004452.1.g00001.1 223 KRWSLQEEDTLRTGVQKYGIGHWKLILEAYRdafEERTEVDLKDKWRNM 271
                                     69********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.544217276IPR017930Myb domain
SuperFamilySSF466891.2E-15219274IPR009057Homeodomain-like
SMARTSM007172.3E-7221274IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-12223272IPR009057Homeodomain-like
CDDcd116608.94E-20223272No hitNo description
PfamPF002493.8E-8224271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MCSASETPRT TAPRRRHGPA KIRDDEDVGK EASAGIYNSV SSAEVKKVQE ELKSSVLALQ  60
AVVTDPLPYA LRVSEMLRSE LGMRPVDHVS KENGGATNPS VEKNTEPDQS NNDNHGNQTS  120
HHNDVPQPTP NLSVDMGKGT ENAGTGDVNP ENPSCSHQNN VSRASLMERN STARTYEWDD  180
SLGMSPEQTN SKGRLHLPNP KRIAVSPLQK YEDKRVSKRR KVKRWSLQEE DTLRTGVQKY  240
GIGHWKLILE AYRDAFEERT EVDLKDKWRN MTSALYQIQC PTMLLDQVTH GTPHIHKRLF  300
QAQNPLNFPS REGRTRPFLD STSERTIKIP LMLTLDARTS GL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294731.10.0PREDICTED: uncharacterized protein LOC101296074
TrEMBLA0A2P6QKV11e-162A0A2P6QKV1_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004294731.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.14e-12TRF-like 5