PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00004186.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 383aa MW: 42528.8 Da PI: 6.3976 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 6.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl FANhyb_rscf00004186.1.g00001.1 14 RGLWSPEEDEKLINYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.2 | 5.3e-15 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ FANhyb_rscf00004186.1.g00001.1 67 RGSFSAQEAALIIQLHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.433 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.68E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.728 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.11E-11 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT NYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SAQEAALIIQ LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLMPHE 120 VIPAFASPFS HFLNPSTAGS DQESFFTTLI TNPNLGLQQE QPYLPIPTPL PPSTFYHGDH 180 SIFKLDYTNY SSNRLHFATP IQLPSNYSSS YDSSWSLGYQ PHLFDSNNQQ AHIFNSIEVS 240 PHFSIGNELM VPSVASLPGY DDHENLSVLP TMPQFCEINI DGNACREIPF DPPDDHPPQE 300 LDSLAKLSSC FGPFGDHGSY NPFDMQIPSN QLEIVDPVVS SLPILSQPAF SSSASSSLSP 360 LLPSSQLFIA NPNVLSSLGS MAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-32 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305719.1 | 0.0 | PREDICTED: transcription factor MYB21 | ||||
TrEMBL | A0A2P6RY73 | 0.0 | A0A2P6RY73_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004305719.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3014 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 9e-83 | myb domain protein 26 |