PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004183.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 551aa    MW: 61886.2 Da    PI: 7.2675
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004183.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4549.4e-1391765452374
                            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                      ++L+ cA+av+++dl +aq+++ +l++++s +g+p+qRl ay++e+L ar a+s+s+++kal+++e +   sse l++
  FANhyb_rscf00004183.1.g00001.1 176 NQVLIFCAKAVADNDLLMAQWMMDELRQMVSVSGEPIQRLGAYMLEGLVARRASSGSSICKALRCKEPA---SSELLSY 251
                                     689*****************************************************************9...9****** PP

                            GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skee 157
                                     +++++ev+P++kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   
  FANhyb_rscf00004183.1.g00001.1 252 MHILYEVCPYFKFGYMSANGAIAEAMKDENRVHIIDFQIGQGSQWLTLIQAFAARPGGPPHIRITGIDDSTSAyaRGGG 330
                                     *********************************************************************998899999* PP

                            GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                                     l+ +g+rL+k+Ae ++vpfef++ +a +  d++le+L v+pgEa+a n++++lh+++desvs++++rd++L+lvkslsP
  FANhyb_rscf00004183.1.g00001.1 331 LNIVGKRLSKLAEMFKVPFEFHA-AAISGCDVQLENLGVRPGEAMAMNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSP 408
                                     ***********************.88999************************************************** PP

                            GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                                     kvv++veqe+++n++ F+ rf+e+l+yy+a+f+s++++lpr++++ri+vE+++l++e+vn++aceg er+erhe l+kW
  FANhyb_rscf00004183.1.g00001.1 409 KVVTLVEQESNTNTAAFFPRFVETLNYYTAMFESIDVTLPRDHKDRINVEQHCLAKEVVNIIACEGIERVERHELLGKW 487
                                     ******************************************************************************* PP

                            GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     r+r+ +aGF+p+pls+ +++++k+ll+++++  yr++e++g+l+lgWk+r Lv+ +aW+
  FANhyb_rscf00004183.1.g00001.1 488 RSRFAMAGFTPYPLSSLVNATIKTLLKNYSD-KYRLQERDGALYLGWKNRDLVASCAWK 545
                                     ******************************5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.572149526IPR005202Transcription factor GRAS
PfamPF035143.3E-136176545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MQASKQHRSS GMSKRLHYQP KQEVEAYCLP PFRILDHQPP YYESSQSTHS TAQSFHERYC  60
TLESSSANGS YNALYNSSST VSFSPSGSPM SQHEQDSHYQ HRSPDHMYGS PISGSCITDD  120
ATDFKYKLKE LETAMLGDSN IFDNYCSSLQ NGARNTRPEV DSWGQIMDSI SKKDLNQVLI  180
FCAKAVADND LLMAQWMMDE LRQMVSVSGE PIQRLGAYML EGLVARRASS GSSICKALRC  240
KEPASSELLS YMHILYEVCP YFKFGYMSAN GAIAEAMKDE NRVHIIDFQI GQGSQWLTLI  300
QAFAARPGGP PHIRITGIDD STSAYARGGG LNIVGKRLSK LAEMFKVPFE FHAAAISGCD  360
VQLENLGVRP GEAMAMNFAF MLHHMPDESV STQNHRDRLL RLVKSLSPKV VTLVEQESNT  420
NTAAFFPRFV ETLNYYTAMF ESIDVTLPRD HKDRINVEQH CLAKEVVNII ACEGIERVER  480
HELLGKWRSR FAMAGFTPYP LSSLVNATIK TLLKNYSDKY RLQERDGALY LGWKNRDLVA  540
SCAWKCKPGT N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-611775456375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293455.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2P6S1K40.0A0A2P6S1K4_ROSCH; Putative transcription factor GRAS family
STRINGXP_004293455.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]