PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00003616.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 278aa MW: 30507.7 Da PI: 6.789

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00003616.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.3	7.3e-33	31	85	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl FANhyb_rscf00003616.1.g00001.1 31 KPRLRWTADLHDRFVDAVTQLGGAAKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 85 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-31	28	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.3E-24	31	86	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.69E-16	31	87	IPR009057	Homeodomain-like
Pfam	PF00249	4.7E-7	33	84	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-15	129	174	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MFPRLMQPPP LEGIEDMHRA DPCLVLTSDP KPRLRWTADL HDRFVDAVTQ LGGAAKATPK 60 AIMRTMNVKG LTLFHLKSHL QKYRLGKQSG KDMDEVSKDG LSASYLLESP GTGNSSPNLP 120 TSDMNEGYEV KEALRVQMEV QSKLHVQVEA EKHLQIRQDA ERRYMAMLER ACKMLADQFI 180 GGSVIDTDGH KCQVLGNKNP KSSSLDPLGF YSLQSTDVAG VHGQEEVLTS FQPQRADCST 240 ESCLTSHESP GGLTLEGSPG GGKKRMLSLE SATASLIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011460083.1	0.0	PREDICTED: myb family transcription factor APL-like
Swissprot	Q94A57	4e-61	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2P6Q1U6	0.0	A0A2P6Q1U6_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004293427.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	2e-63	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]