PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003425.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 304aa    MW: 34642.6 Da    PI: 7.4979
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003425.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.1e-082463340
                                    SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40
                                     WT+eE +l+  a + +  +   +W +Iar+++ g+t  ++
  FANhyb_rscf00003425.1.g00001.1 24 DWTKEENKLFESALAIFDEKtpdRWVKIARMIP-GKTVFDV 63
                                    6********************************.***8776 PP
2Myb_DNA-binding42.41.6e-13125169347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT++E+++++++  q+G+g+W++I+r +   +t+ q+ s+ qky
  FANhyb_rscf00003425.1.g00001.1 125 PWTEDEHLRFLKGLLQYGKGDWRSISRNFVMSKTPTQVASHAQKY 169
                                     7*****************************899***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.9982072IPR017884SANT domain
SMARTSM007175.3E-92173IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-122379IPR009057Homeodomain-like
PfamPF002491.0E-52467IPR001005SANT/Myb domain
CDDcd001671.14E-72570No hitNo description
PROSITE profilePS5129416.922117174IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-9117174IPR009057Homeodomain-like
SuperFamilySSF466891.94E-15120174IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-17121173IPR006447Myb domain, plants
SMARTSM007173.0E-9122172IPR001005SANT/Myb domain
CDDcd001674.15E-8125170No hitNo description
PfamPF002499.7E-11125169IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MQTLYPASYM ADTNWFLQES QSSDWTKEEN KLFESALAIF DEKTPDRWVK IARMIPGKTV  60
FDVFKQYKEL EDDVTNIEAG LFEIPGYQQT SAFTLELVDD RNFDANRKRS AAARGSDQER  120
KKGIPWTEDE HLRFLKGLLQ YGKGDWRSIS RNFVMSKTPT QVASHAQKYF MRQHSGGKDK  180
RRPSIHDITT VNLTSTTTTS PSQNNNRSPL DQSPPPEHNS KSTESPRVVL DWNIRPNDGV  240
AGAMIFGATH GDLFESSSPY DVGSPEDLKL HWQKLYASTT HYAAHARSPS SMYLMHPSRH  300
QIHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-1425921178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00489DAPTransfer from AT5G05790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307612.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H73e-88DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2P6SKY80.0A0A2P6SKY8_ROSCH; Putative transcription factor MYB/SANT family
STRINGXP_004307612.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-79MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]