PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003291.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 271aa    MW: 30453.8 Da    PI: 7.4292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003291.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.5e-07149192755
                                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     ++ r RR++i ++ +eL +l+P        K++ ae+L+ A  Y+k Lq
  FANhyb_rscf00003291.1.g00001.1 149 IAARERRRKITEKTQELGKLVPGG-----SKMNTAEMLTAAYSYVKFLQ 192
                                     56799*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.66E-8140194No hitNo description
PROSITE profilePS5088813.014142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-11145200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10145196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-5150192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MTCIQQNLEA ELVGDFLQCV NADYSNPHNF LDPWYDTCSL VNFEYPGFDH LHPRSSFKPD  60
MFPVQDFEPY PLPKRQKCSK DYQYPDLTPG FSSAFVPNPC PRPEYFPGAF TAPALDFQHA  120
EVVDGSTRKP SVENVGKKVE ERSVSPQSIA ARERRRKITE KTQELGKLVP GGSKMNTAEM  180
LTAAYSYVKF LQAQMGILQF MGSFQEVKAA TATKVLHVAA SPTIQEKLYM EQKCLVPKEF  240
VEVLANYFDA QSKLSLSHKL KGVCGGISKL F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468863.10.0PREDICTED: transcription factor bHLH52-like isoform X1
TrEMBLA0A2P6Q8E51e-126A0A2P6Q8E5_ROSCH; Putative transcription factor bHLH family
STRINGXP_009361875.11e-76(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.15e-27bHLH family protein