PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003136.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 313aa    MW: 35494.1 Da    PI: 6.979
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003136.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-082872345
                                    SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                     WT+eE +++ +a +++ ++   +W ++a  ++ g+t  +++  + 
  FANhyb_rscf00003136.1.g00001.1 28 EWTAEENKRFENALALYDKDtpdRWQKVAYLIP-GKTVGDVIKQYK 72
                                    5********************************.****99988775 PP
2Myb_DNA-binding46.87e-15139183347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  FANhyb_rscf00003136.1.g00001.1 139 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 183
                                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.0882479IPR017884SANT domain
SMARTSM007171.4E-92577IPR001005SANT/Myb domain
CDDcd001673.85E-72874No hitNo description
SuperFamilySSF466892.48E-112881IPR009057Homeodomain-like
PfamPF002498.9E-72872IPR001005SANT/Myb domain
PROSITE profilePS5129420.193132188IPR017930Myb domain
SuperFamilySSF466894.35E-17133187IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-17135187IPR006447Myb domain, plants
SMARTSM007172.8E-13136186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-13136183IPR009057Homeodomain-like
CDDcd001678.48E-11139183No hitNo description
PfamPF002492.6E-12139183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MYRGIEVLSP ASYIQNSNWL FQESKGAEWT AEENKRFENA LALYDKDTPD RWQKVAYLIP  60
GKTVGDVIKQ YKELEEDVSD IEAGLIPIPG YSNNNSFTLE WVDDQGFDGL KQYYSVGGNG  120
GKRDSSTRPS EQERKKGVPW TEEEHRQFLM GLKKYGKGDW RNISRNFVTT RTPTQVASHA  180
QKYYIRQLTG GKDKRRSSIH DITTVNVSDT KSGSVGSSQS TSRSSTSQDH DSAVVVQSQQ  240
HPKMSNKQQF DWKVSNEGPQ MVFNSMNGNA IIGPFFGISS PVPKLEEQDF FSGSTFHGSQ  300
FDHHNARFEM QYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-162691873RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302668.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-107DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2P6R9B00.0A0A2P6R9B0_ROSCH; Putative transcription factor MYB/SANT family
STRINGXP_004302668.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-115MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]