PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00003018.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 437aa MW: 49074.3 Da PI: 10.2452 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 365.5 | 1e-111 | 1 | 310 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflq 62 mdd +++ r+k+ yy+ ++ ++l +++++ms+iaerda+irern+a+sek++a+a+rd+a+ q FANhyb_rscf00003018.1.g00001.1 1 MDDGRHENgRHKPdYYRgapspwnmtaqqqvKEpNALV--MNKKIMSIIAERDAAIRERNAAISEKNEALAARDEALRQ 77 899999999****9999********9987663345666..99************************************* PP GAGA_bind 63 rdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaa 141 rd+a+++r+ al+erdn+++a ++ns++ p + ++ +g+k ++ + + +++d ++ +++ ++ea+pi+ FANhyb_rscf00003018.1.g00001.1 78 RDEAFSQRDTALMERDNAFAAFHIRDNSMN--FPLSGGAQRGSKRMHYPSH-HPVNMADGPYSTKDVPITEAFPISVLS 153 ************************999965..5778888999999995554.779**********************99 PP GAGA_bind 142 eeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalr 220 ea +++++k+++++k +++k ++kk +e+ +++ ++++ + ++e++++dl+ln vs+De+t+PvPvCsCtG++r FANhyb_rscf00003018.1.g00001.1 154 AEAIKSRQTKRSKQNKASRASKPSRKKV-GEDLNRQASTDG--IKYRSEWDTQDLGLNLVSFDETTMPVPVCSCTGMPR 229 9999999999888888888887777666.667777777777..569********************************* PP GAGA_bind 221 qCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvt 299 qCYkWGnGGWqS+CCtt++S+yPLP+++++r+aR++grKmS+++f++lL++LaaeG+dls p+DLk++WA+HGtn+++t FANhyb_rscf00003018.1.g00001.1 230 QCYKWGNGGWQSSCCTTNMSMYPLPQMPNKRHARMGGRKMSGSVFTRLLSRLAAEGHDLSVPLDLKEYWARHGTNRYIT 308 ******************************************************************************* PP GAGA_bind 300 ir 301 i+ FANhyb_rscf00003018.1.g00001.1 309 IK 310 *8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 1.6E-100 | 1 | 310 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 1.6E-148 | 1 | 310 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 437 aa Download sequence Send to blast |
MDDGRHENGR HKPDYYRGAP SPWNMTAQQQ VKEPNALVMN KKIMSIIAER DAAIRERNAA 60 ISEKNEALAA RDEALRQRDE AFSQRDTALM ERDNAFAAFH IRDNSMNFPL SGGAQRGSKR 120 MHYPSHHPVN MADGPYSTKD VPITEAFPIS VLSAEAIKSR QTKRSKQNKA SRASKPSRKK 180 VGEDLNRQAS TDGIKYRSEW DTQDLGLNLV SFDETTMPVP VCSCTGMPRQ CYKWGNGGWQ 240 SSCCTTNMSM YPLPQMPNKR HARMGGRKMS GSVFTRLLSR LAAEGHDLSV PLDLKEYWAR 300 HGTNRYITIK VLPVPLYGMA AAVKPIPISI WSVLSNFCGL CSWSVLSNFC QKRVLPLFHF 360 LQTIATSYWM EHSNLLPLLT FASGLPYIAA FAMLCSLNTV LSVSSHHCFR NAVVAFLNPT 420 PATRLKTGRQ TRRGFRL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290338.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4 | ||||
Refseq | XP_011458302.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4 | ||||
Swissprot | Q8S8C6 | 1e-133 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A2P6PQ67 | 0.0 | A0A2P6PQ67_ROSCH; Putative transcription factor GAGA-Binding-like family | ||||
STRING | XP_004290338.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6974 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G21240.2 | 1e-133 | basic pentacysteine 4 |