PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00002925.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 28935.9 Da PI: 8.8709 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39 | 1.5e-12 | 70 | 116 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+P++ K++Ka+ L +++ +k+L FANhyb_rscf00002925.1.g00001.1 70 KSHSQAEKRRRDRINAQLATLRKLIPQS-----DKMDKAALLGSVIDEVKDL 116 79*************************8.....7***********9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.932 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-13 | 68 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-10 | 70 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.46E-10 | 70 | 118 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.1E-14 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-10 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.20E-4 | 167 | 232 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MENCYYAEGP NWVNQYQTAA AVSNESSSFQ VPWPNVSNST PFQFCGGFPP SWSSTAEGLA 60 EEDRAASASK SHSQAEKRRR DRINAQLATL RKLIPQSDKM DKAALLGSVI DEVKDLKRRA 120 NEVSKALMVP TEFDDVTVSQ CDLVHEGTPT NSTSINKNKD NSIMIRVSVC CDDQPELFRE 180 LIQVLKRLKL TAMKADIASA GGRIKSILVL CSNDSEETVS ISNLKQALKL VLSKIAASSA 240 TPNCRIRSKR QRFFLPFQYP K |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307674.1 | 0.0 | PREDICTED: transcription factor bHLH51 | ||||
TrEMBL | A0A2P6SLC6 | 1e-165 | A0A2P6SLC6_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004307674.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5796 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 1e-49 | bHLH family protein |