PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002830.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 809aa MW: 95102.8 Da PI: 7.6469

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002830.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.9	1.2e-16	47	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..........................teker 52 k+Y++Y+++ GF +r+++s+ks +r++e+t+r fvC +gk+ ++++k +k+r FANhyb_rscf00002830.1.g00001.1 47 KYYEDYGRQEGFWMRIRTSSKStSRSNEVTNRLFVCAHQGKHVTRTQKedhikekyerdeedeedaeeacdkqiGNKKR 125 69************999998788999*********999988889******************9999999 PP FAR1 53 rtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++ ++ ++gC+a+++v +k ++kw+v+ ++ HnH+++ FANhyb_rscf00002830.1.g00001.1 126 KSCSTLKCGCEASMQVLYDKwTNKWKVYVFSDIHNHKIV 164 99999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-12	47	164	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.1E-36	282	376	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.151	563	599	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0015	574	601	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	6.7E-5	575	595	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence Send to blast
MNLTSEDCDL GSSMNQVSSN EATDQDNRKL KSPFVGMVFE TLEEARKYYE DYGRQEGFWM 60 RIRTSSKSTS RSNEVTNRLF VCAHQGKHVT RTQKEDHIKE KYERDEEDEE DAEEACDKQI 120 GNKKRKSCST LKCGCEASMQ VLYDKWTNKW KVYVFSDIHN HKIVTPARRM RMKSNRHMPD 180 AAKNLTEAFQ KENLRISKVP SMFGGAHNIG FDNRDCYNHL RNVRHKELEY GDAQSVLNYF 240 RKKQAENPQF FYAIQCDENG RATNFFWVDS RSRTSYQYFG DVVTFDTTYR TNKYDMPFAP 300 FTGVNHHFQS IQFGCALLQD ETEATFLWLF ETWLDAMGGR HPLCVITDQD LAMKGAIAKT 360 FPNTRHRLCI WHIKKKFGEK LAHVYYKKSS FKIGMRKCIW DTYRIDDFEY QWKKLMEEYK 420 LEQNEWLQQL HEIRESWVPV YNRNTFFAGM NTTGRSEGTN AFFDDFVTST TNLKEFVIKY 480 EQALQKIITR ESNEDFISEH KYRIVDDDDF LLKHAAQVYT RNIFEKFKRE WSRVKRLKVE 540 ERGSDNHFHR YSVMKKTENS KEFMVEMDLQ TQEGKCECQN FEFVGIICRH IMKVFVRQDI 600 DIIPSHFILP RWRQGANKFR VTDSEALVKN DDKEQSEALR FSHMCRRATQ LACHAAPSDE 660 AYKMYMDGLD ELSNKISEVN KVTKEVAIES EDHVFQDEVD QCASKSSESL LLDPNISKTK 720 GRKKDDNSKR NTTSSKRIKS GMELAQSKKR KCTMCQQTGH NKLTCILNPD AKRNTNPSTN 780 QRNKNMQESD RVSDEETSEE EDSDSSHQE

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence Send to blast

MNLTSEDCDL GSSMNQVSSN EATDQDNRKL KSPFVGMVFE TLEEARKYYE DYGRQEGFWM  60
RIRTSSKSTS RSNEVTNRLF VCAHQGKHVT RTQKEDHIKE KYERDEEDEE DAEEACDKQI  120
GNKKRKSCST LKCGCEASMQ VLYDKWTNKW KVYVFSDIHN HKIVTPARRM RMKSNRHMPD  180
AAKNLTEAFQ KENLRISKVP SMFGGAHNIG FDNRDCYNHL RNVRHKELEY GDAQSVLNYF  240
RKKQAENPQF FYAIQCDENG RATNFFWVDS RSRTSYQYFG DVVTFDTTYR TNKYDMPFAP  300
FTGVNHHFQS IQFGCALLQD ETEATFLWLF ETWLDAMGGR HPLCVITDQD LAMKGAIAKT  360
FPNTRHRLCI WHIKKKFGEK LAHVYYKKSS FKIGMRKCIW DTYRIDDFEY QWKKLMEEYK  420
LEQNEWLQQL HEIRESWVPV YNRNTFFAGM NTTGRSEGTN AFFDDFVTST TNLKEFVIKY  480
EQALQKIITR ESNEDFISEH KYRIVDDDDF LLKHAAQVYT RNIFEKFKRE WSRVKRLKVE  540
ERGSDNHFHR YSVMKKTENS KEFMVEMDLQ TQEGKCECQN FEFVGIICRH IMKVFVRQDI  600
DIIPSHFILP RWRQGANKFR VTDSEALVKN DDKEQSEALR FSHMCRRATQ LACHAAPSDE  660
AYKMYMDGLD ELSNKISEVN KVTKEVAIES EDHVFQDEVD QCASKSSESL LLDPNISKTK  720
GRKKDDNSKR NTTSSKRIKS GMELAQSKKR KCTMCQQTGH NKLTCILNPD AKRNTNPSTN  780
QRNKNMQESD RVSDEETSEE EDSDSSHQE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024164366.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A251QDD0	0.0	A0A251QDD0_PRUPE; Uncharacterized protein
STRING	XP_008219733.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-140	FAR1-related sequence 5