PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002653.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NF-YB

Protein Properties

Length: 93aa MW: 10821.1 Da PI: 7.0269

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002653.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	49.8	8.4e-16	1	44	54	97
NF-YB 54 cqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 c++e+rkt+ngdd++ al+tlGf+dy++ l+ yl++ r+ eg++ FANhyb_rscf00002653.1.g00001.1 1 CRKERRKTVNGDDICCALGTLGFDDYAALLRRYLHRCRDQEGAE 44 99*************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.3E-14	1	57	IPR009072	Histone-fold
PRINTS	PR00615	3.8E-5	1	14	No hit	No description
SuperFamily	SSF47113	1.2E-10	1	52	IPR009072	Histone-fold
PRINTS	PR00615	3.8E-5	20	38	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
CRKERRKTVN GDDICCALGT LGFDDYAALL RRYLHRCRDQ EGAEHRANIG KNNNEDELKL 60 LANNNILSTA QEQRIIMIMN QYDHPDHHDI QKT

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004296821.1	4e-59	PREDICTED: nuclear transcription factor Y subunit B-4-like
Swissprot	O82248	2e-15	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A2P6QY85	2e-42	A0A2P6QY85_ROSCH; Putative transcription factor Hap3/NF-YB family
STRING	XP_004296821.1	2e-58	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	8e-18	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]