PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002586.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 317aa    MW: 35271.3 Da    PI: 7.466
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002586.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161462148
                                    TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  FANhyb_rscf00002586.1.g00001.1 14 KGPWSPEEDAKLKEYIEKYGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                                    79*********************************************97 PP
2Myb_DNA-binding41.23.9e-1369111246
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     g ++ eEd+++ +++   G++ W+ Ia+ ++ gRt++++k++w++
  FANhyb_rscf00002586.1.g00001.1  69 GEFSDEEDKIICNLFSSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                     789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.097966IPR017930Myb domain
SuperFamilySSF466891.04E-2711109IPR009057Homeodomain-like
SMARTSM007175.5E-131364IPR001005SANT/Myb domain
PfamPF002497.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-251569IPR009057Homeodomain-like
CDDcd001673.76E-101662No hitNo description
PROSITE profilePS5129417.11567117IPR017930Myb domain
SMARTSM007174.1E-1267115IPR001005SANT/Myb domain
PfamPF002491.1E-1169111IPR001005SANT/Myb domain
CDDcd001677.62E-970113No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2370118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRAPCCDKD NVKKGPWSPE EDAKLKEYIE KYGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDKIIC NLFSSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLNQY  120
SMMGIIPHHF SSLLHPQTST SSSSLTSYRS SNNRTPSYYT HQARSFTGAN LESHIPFSPS  180
LLSCTNTTTN AALQVGQDSF VGQPMMQHYL AKDNNLVFGG TTTEASCSSS DGSYGTTGYG  240
EVQLGLQNYF YNNGAEANNQ KIMVSESGLG LDHDQAPLDY GLEEIKQLIS SSTTTSGGCN  300
SFLFDENKTE EKVMMYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26141187109B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304464.10.0PREDICTED: transcription factor RAX2
TrEMBLA0A2P6RB180.0A0A2P6RB18_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004304464.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-76myb domain protein 36