PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002574.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 288aa MW: 31239.4 Da PI: 9.6671

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002574.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.1	1.9e-38	30	90	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprC+s ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k+++ FANhyb_rscf00002574.1.g00001.1 30 HHEPQKCPRCESLNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKGKRAK 90 57889***************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-25	30	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-33	33	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.742	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MQGEQDHQQH NNQDRKVNQQ QRQQGQQQQH HEPQKCPRCE SLNTKFCYYN NYSLSQPRYF 60 CKACRRYWTQ GGTLRNVPVG GGCRKGKRAK TMSSSSSATS SHSVLQPQQQ PQVHQLHERS 120 LMMSTGPAAL NSLSGSQYYS DGAGYLTSMP FTQNLDHLGG SGQLGSGGGA SNLGLLHGFN 180 AISSYGQRQM QSQVLKSMEP PPLYPSEDHR GLLLQPAMSS GSMTDWPKFI NKSHSSASAA 240 AASTGHSAPW STTMGNNTST SSGKVGSSLN SSQRPDDHAA SFSTGLPQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011460662.1	1e-145	PREDICTED: dof zinc finger protein DOF3.1-like isoform X1
TrEMBL	A0A2P6Q461	1e-131	A0A2P6Q461_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004294005.1	1e-139	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	6e-34	OBF binding protein 4