PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002451.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 1147aa MW: 132414 Da PI: 8.457

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002451.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39	2.6e-12	49	130	3	91
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 ++YA ++G +r+++++k+ +g + ++vCs+ + ++ k++ ++++++ tgC +++ +++dg++++t++ FANhyb_rscf00002451.1.g00001.1 49 CKDYAMKTGWAIRTRSNSKR--DGALKYVQLVCSRAFRGKSLKES-----EPKSSQITGCSTRIRAVLNSDGEYKLTTI 120 579********9987766..999*****98776665555.....89999******************** PP FAR1 82 eleHnHelap 91 leHnH+l+p FANhyb_rscf00002451.1.g00001.1 121 CLEHNHHLCP 130 ******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-10	49	130	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-32	250	343	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.497	600	636	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-7	607	634	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-7	611	638	IPR006564	Zinc finger, PMZ-type
SuperFamily	SSF54001	1.61E-24	946	1125	No hit	No description
PROSITE profile	PS50600	10.197	960	1100	IPR003653	Ulp1 protease family, C-terminal catalytic domain
Pfam	PF02902	1.9E-6	998	1119	IPR003653	Ulp1 protease family, C-terminal catalytic domain
Gene3D	G3DSA:3.30.310.130	1.2E-6	1005	1094	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0008234	Molecular Function	cysteine-type peptidase activity
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1147 aa Download sequence Send to blast
MDGNNTSQVP YVEEDDLIAS NEVDLELDDR DIPKTGMIFS CYGVMYDYCK DYAMKTGWAI 60 RTRSNSKRDG ALKYVQLVCS RAFRGKSLKE SEPKSSQITG CSTRIRAVLN SDGEYKLTTI 120 CLEHNHHLCP EATRRIRQYR GLDQHSKHRF SSNQDAGVRP SKNIHAILTE KGGYTNLGYT 180 VKDARNFINK RTTLKLQSGD ADALHRYFVM MQKNNPEFFY SIDVDDEGRL RNVFWADARS 240 RAACEDFGDV ITFDTTCLTN KYDMPFAPFV GVNHHGQSIL LGCGLLCDET TMSFIWLYEE 300 WKKCIKGKSP NAIITDQCAS MKNAIVVVFP DAKHRWCLWH IMEKIPKKLR HYKKSYEGVK 360 SSMTDAVYEA LSIDDFEREW TSMREKYFPD GDNWHYKKSY EGIKSSMTDA VYEALSIDDF 420 EREWTSMREK YFPDGDNWLD ELYKERHRWV PIFLKDKFWV GMSTTQRSKS INAFFDKFVK 480 STTSLKIFVE QYGAAMADKI EKEEQEEFNT LYRSIEPFSG FKFEKQFRDA YTNVEFKEFQ 540 DELRANVYCN SWPAKEEGAR CTHKVMESRF KKKRKGGRKQ KVFLKASVTK ELKYKGPICQ 600 HVLFDKDSND IKCTCRLFEF RGILCRHIIS VLIQREVATV SDKYVLTRWK KSLKRKYSLI 660 KGCYDDPKFK EVRTLQNKML EAFHDLVNFV EGKMQTDIVL QGITELKAKV IQSKPVPNLK 720 VDSSSLEEPE TTKKILDPKV VKRVGRPTFK RKISKAEEVI QRAKKRRYNR KVTQSTMTKK 780 LSKNTVEYEN GCDIGVNYST SPHVYDPPKT PTMSGNIKST AFRVDSTPIS NSGYPITPPN 840 FYTHGSNLST NLSGQIFHNV KMEYDIGGDC IVDQDAASIN NLSTGVCSFS QLLNMVSSVG 900 STVPKSSIGY MEVREQCGTN GTTTSMSILE RQVLDYIFDR SLLKQKKGQV EETLSQIDGF 960 SIKRDEIIVL QDHSWLGDQV LNMYIKLINL DRETNDRYVF LTFLALIFPV CLHSHWVAFA 1020 IDLMKHKIEI LDTLYDKILP GLDEIIYGVL IILEELSKDF GEVIFNHKMY STDTIPLAKI 1080 VRQENTWDCG VLLIKVMESW YGKITTEIDK DMADKYRLDI ATSIVLSHHN ELRNQIIEKA 1140 TERSTNL

Sequence ? help Back to Top

Protein Sequence Length: 1147 aa Download sequence Send to blast

MDGNNTSQVP YVEEDDLIAS NEVDLELDDR DIPKTGMIFS CYGVMYDYCK DYAMKTGWAI  60
RTRSNSKRDG ALKYVQLVCS RAFRGKSLKE SEPKSSQITG CSTRIRAVLN SDGEYKLTTI  120
CLEHNHHLCP EATRRIRQYR GLDQHSKHRF SSNQDAGVRP SKNIHAILTE KGGYTNLGYT  180
VKDARNFINK RTTLKLQSGD ADALHRYFVM MQKNNPEFFY SIDVDDEGRL RNVFWADARS  240
RAACEDFGDV ITFDTTCLTN KYDMPFAPFV GVNHHGQSIL LGCGLLCDET TMSFIWLYEE  300
WKKCIKGKSP NAIITDQCAS MKNAIVVVFP DAKHRWCLWH IMEKIPKKLR HYKKSYEGVK  360
SSMTDAVYEA LSIDDFEREW TSMREKYFPD GDNWHYKKSY EGIKSSMTDA VYEALSIDDF  420
EREWTSMREK YFPDGDNWLD ELYKERHRWV PIFLKDKFWV GMSTTQRSKS INAFFDKFVK  480
STTSLKIFVE QYGAAMADKI EKEEQEEFNT LYRSIEPFSG FKFEKQFRDA YTNVEFKEFQ  540
DELRANVYCN SWPAKEEGAR CTHKVMESRF KKKRKGGRKQ KVFLKASVTK ELKYKGPICQ  600
HVLFDKDSND IKCTCRLFEF RGILCRHIIS VLIQREVATV SDKYVLTRWK KSLKRKYSLI  660
KGCYDDPKFK EVRTLQNKML EAFHDLVNFV EGKMQTDIVL QGITELKAKV IQSKPVPNLK  720
VDSSSLEEPE TTKKILDPKV VKRVGRPTFK RKISKAEEVI QRAKKRRYNR KVTQSTMTKK  780
LSKNTVEYEN GCDIGVNYST SPHVYDPPKT PTMSGNIKST AFRVDSTPIS NSGYPITPPN  840
FYTHGSNLST NLSGQIFHNV KMEYDIGGDC IVDQDAASIN NLSTGVCSFS QLLNMVSSVG  900
STVPKSSIGY MEVREQCGTN GTTTSMSILE RQVLDYIFDR SLLKQKKGQV EETLSQIDGF  960
SIKRDEIIVL QDHSWLGDQV LNMYIKLINL DRETNDRYVF LTFLALIFPV CLHSHWVAFA  1020
IDLMKHKIEI LDTLYDKILP GLDEIIYGVL IILEELSKDF GEVIFNHKMY STDTIPLAKI  1080
VRQENTWDCG VLLIKVMESW YGKITTEIDK DMADKYRLDI ATSIVLSHHN ELRNQIIEKA  1140
TERSTNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	749	766	KRKISKAEEVIQRAKKRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF34506	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-97	FAR1-related sequence 5