PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002222.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 362aa MW: 38391.2 Da PI: 8.5558

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002222.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.6	7.8e-40	39	99	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+++ FANhyb_rscf00002222.1.g00001.1 39 PEQALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKRVR 99 6899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-28	30	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	41	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.506	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010052	Biological Process	guard cell differentiation
GO:0010118	Biological Process	stomatal movement
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1902066	Biological Process	regulation of cell wall pectin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MMSSDNSPAK KQADDTQQGG GGGGGTGNSR KTTSSKAPPE QALKCPRCDS PNTKFCYYNN 60 YSLTQPRHFC KTCRRYWTKG GALRNVPIGG GCRKNKRVRS SSSRLSCSLD SKDSGDSASD 120 HMGLKFFHGI SPAMDFQLGG LSLPRLNHHP SSSSAVVTAL YNNNNNSQFS PYGDVSVTSG 180 LTLDPSGGAA GNNSFMGFNY PLTLGSGSGG GVGFHQNNMN TAMNVHSSLA SSIESLSSIN 240 QDLHWKLQQQ RLSMLFGTSI AGDSQTQPSQ KDLQMNDLEK TQTAVPILFQ NLEISKPKEC 300 AGGGDTAATE WFFGNSYAPP PVTPTPTNSG GNGGGNENNA GNWNSHGVVQ AWGDLQQYNA 360 LP

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MMSSDNSPAK KQADDTQQGG GGGGGTGNSR KTTSSKAPPE QALKCPRCDS PNTKFCYYNN  60
YSLTQPRHFC KTCRRYWTKG GALRNVPIGG GCRKNKRVRS SSSRLSCSLD SKDSGDSASD  120
HMGLKFFHGI SPAMDFQLGG LSLPRLNHHP SSSSAVVTAL YNNNNNSQFS PYGDVSVTSG  180
LTLDPSGGAA GNNSFMGFNY PLTLGSGSGG GVGFHQNNMN TAMNVHSSLA SSIESLSSIN  240
QDLHWKLQQQ RLSMLFGTSI AGDSQTQPSQ KDLQMNDLEK TQTAVPILFQ NLEISKPKEC  300
AGGGDTAATE WFFGNSYAPP PVTPTPTNSG GNGGGNENNA GNWNSHGVVQ AWGDLQQYNA  360
LP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004289514.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBL	A0A2P6RPT6	0.0	A0A2P6RPT6_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004289514.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	5e-52	Dof family protein