PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00002219.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WOX | ||||||||
Protein Properties | Length: 233aa MW: 26612.7 Da PI: 9.5714 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 142 | 202 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t++++qle+Le+ +++ n +p +++ +e++k+l ++te++V++WFqNrRa+ k+ FANhyb_rscf00002219.1.g00001.1 142 RQRWTPSNTQLEILERIYNEaNGTPGKHRVKEITKELsqhgQVTETNVYNWFQNRRARSKR 202 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 93.2 | 2.3e-30 | 141 | 204 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP+++Q++iLe++y+++ tP k+++++it+eL+++G+++++NV++WFQNr+aR+++kq FANhyb_rscf00002219.1.g00001.1 141 ARQRWTPSNTQLEILERIYNEANGTPGKHRVKEITKELSQHGQVTETNVYNWFQNRRARSKRKQ 204 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.366 | 138 | 203 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-16 | 138 | 205 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.3E-11 | 140 | 207 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.5E-17 | 140 | 205 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.79E-12 | 142 | 204 | No hit | No description |
Pfam | PF00046 | 2.8E-17 | 142 | 202 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEGQRKVLAV KERLRTQNPD GFCVMTDDQV EQLQKQIAVY AVICEQLVDM HKAFTAQQDL 60 AGSSLNLQFS ITLPFIMQKL YDTTSLGPCF FRAILFYSLH LLTMKFLLNI LPISISLSGP 120 GMKMGNVYGD LMPFGGNKVT ARQRWTPSNT QLEILERIYN EANGTPGKHR VKEITKELSQ 180 HGQVTETNVY NWFQNRRARS KRKQSVPTRN ITESDIEPEV ISPKDKKTKP EDM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 203 | RRARSKRKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300539.1 | 2e-76 | PREDICTED: WUSCHEL-related homeobox 8-like | ||||
TrEMBL | A0A2P6PBJ9 | 6e-69 | A0A2P6PBJ9_ROSCH; Putative transcription factor Homobox-WOX family | ||||
STRING | XP_004300839.1 | 2e-94 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 7e-35 | WUSCHEL related homeobox 13 |