PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002218.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 735aa    MW: 81181.9 Da    PI: 7.3402
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002218.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23121222199
                                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ +
  FANhyb_rscf00002218.1.g00001.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHK 197
                                     89****************************996555555..89************************************ PP

                                     T--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +L +gD++vF   + +++ l+v+++r+
  FANhyb_rscf00002218.1.g00001.1 198 KLVAGDSIVFL--RAENGDLCVGIRRA 222
                                     ***********..4488999****997 PP
2Auxin_resp116.91.8e-38288371183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSk 78 
                                     aa+ as++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+
  FANhyb_rscf00002218.1.g00001.1 288 AATLASNGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVQVSDPMRWPESP 366
                                     6899*************************************************************************** PP

                      Auxin_resp  79 WrsLk 83 
                                     Wr+L+
  FANhyb_rscf00002218.1.g00001.1 367 WRLLQ 371
                                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.9E-38113225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-29114224IPR015300DNA-binding pseudobarrel domain
CDDcd100173.10E-21120221No hitNo description
PfamPF023629.5E-22121222IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112121223IPR003340B3 DNA binding domain
SMARTSM010191.7E-21121223IPR003340B3 DNA binding domain
PfamPF065073.0E-33288371IPR010525Auxin response factor
PROSITE profilePS5174520.735616696IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MITFMDSKEK LKEGEKCLDP QLWHACAGGM VQMPLVNAKV FYFPQGHAEH ACGPVDFRNY  60
PRVPPYILCR VSAIKFMADP ETDEVYAKIR LVSLSSSEAG YEDNGIGGIN GADSQDKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ESSSGWNPAG  240
GNCAMPYGGF SSYLREDEGK LMRNGNGNAS NGSLMGKGKV GPESVLEAAT LASNGQPFEV  300
VYYPRASTPE FCVKASLVKA ALQIRWCPGM RFKMAFETED SSRISWFMGT ISSVQVSDPM  360
RWPESPWRLL QVSWDEPDLL QNVKRVSPWL VELVSNMPAI HLTPFSPPRK KMRLPQHPDF  420
PFEGQLPMPT FSGNHHLLGT SSPFGCLPDK TPAGMQGARH AHYGLSLSDI HLNKLQSGLF  480
PAGFPPLDHV ATPTKFSNNT MIQRPTMSEN VSCLLTMSHS PQSTKKSEDV KPPQLMLFGK  540
PILTEQQISL SSSGDTVSPV VTGNSLSDGS GDKMANHSEN SGSALHQQSV QERSSGEGFF  600
HWYKDTRHEA EANLETGHCK VFMESEDVGR TLDFSQFKSY DELYTKLADM FGIENSETLN  660
HVLYRDATGA VKHIGDEPFS DFVKTARRLT ILMDSGSNNV GICGRSRTYT DLIYELPIQI  720
IPVSWSIFLS RRRNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-81339232388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304436.10.0PREDICTED: auxin response factor 18-like isoform X2
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2P6RAT80.0A0A2P6RAT8_ROSCH; Auxin response factor
STRINGXP_004304436.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]