PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002122.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YA
Protein Properties Length: 402aa    MW: 44404.2 Da    PI: 9.6933
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002122.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.13.3e-29209264258
                       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                      p+YVNaKQy++I++RRq+Rak+  e++  ++ rkpy+heSRh hA+rRpRg+gGrF
  FANhyb_rscf00002122.1.g00001.1 209 GPIYVNAKQYRGIIRRRQSRAKAVMENRA-ARLRKPYMHESRHLHAMRRPRGCGGRF 264
                                     69***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.5E-32206267IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.114207267IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-25210264IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.4E-22210232IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.4E-22241264IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAMQTVHYKE HEGLGQLSSV LPWWGTAFGS QQAYGESCGH SKPFTMELPN SGNQLTSTKQ  60
PGRGTEQGLD KGITNQFTIF PGLGCLNGRQ DKDYQNFCPY EPLSRDGQKS QPEISLQSSP  120
PKYRGHFELG FSQPVICAKY PYMDQCYGLF STYGSQVSVS FPIIPGTTIA LLFILQTNFL  180
LPSYFMHTCY LAVTPGRVML PLNLTTDEGP IYVNAKQYRG IIRRRQSRAK AVMENRAARL  240
RKPYMHESRH LHAMRRPRGC GGRFLNSKTS NNGKGGNGTK QVGDVQLFRH SGSQSSEVLH  300
SETGTLNSSK TNSSSSNISG SEVTSTYSRG DLDHFSMNLG HSVHSLSNMM DGSGSKDRPA  360
TIWLLSEGKS FLARVHTGCL LPFQAFLLFG WLVKTPSASQ IT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-16208272266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303411.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like
TrEMBLA0A2P6RCM91e-155A0A2P6RCM9_ROSCH; Putative transcription factor Hap2/NF-YA family
STRINGXP_004303411.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-39nuclear factor Y, subunit A10