PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002042.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family G2-like
Protein Properties Length: 339aa    MW: 37025 Da    PI: 6.0522
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002042.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like39.51.2e-124266125
                         G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
                                    kprlrWt eLHerFv+av+qLGG++
  FANhyb_rscf00002042.1.g00001.1 42 KPRLRWTAELHERFVDAVTQLGGPD 66
                                    79*********************98 PP
2G2-like521.6e-16881182555
                         G2-like  25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                      +AtPkti+++m+vkgLtl+h+kSHLQkYRl
  FANhyb_rscf00002042.1.g00001.1  88 SEATPKTIMRTMGVKGLTLYHLKSHLQKYRL 118
                                     68****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-3039119IPR009057Homeodomain-like
SuperFamilySSF466892.51E-1341121IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-84273IPR006447Myb domain, plants
PfamPF002491.3E-644117IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.6E-1084119IPR006447Myb domain, plants
PfamPF143795.2E-27175222IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MYSAMHSLPL DGGVCGHGEF SGSLDGTNLP GDACLVLTTD PKPRLRWTAE LHERFVDAVT  60
QLGGPDSKEV DPNFKGWSPH LSHLFILSEA TPKTIMRTMG VKGLTLYHLK SHLQKYRLGK  120
QSFKESTENS KDGISPEHFE TIKFGIAASC IAECQDTGSS ATSSRVIAQD LNDGFQVTEA  180
LRVQMEVQRR LHEQLEVQRR LQLRIEAQGK YLQSILEKAC KALNDQAATA AGLEAAKEEL  240
SELAIKVSSD CQGIDTIKMP SLSEIAAAIE NQSVPNILAR MGNCSVDSCL TSTGSPGSPM  300
DMSSLAVKKR QRPFFGNGES LPLDGNMRQE VEWMMNNIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-1542120258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-1542120258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-1542120157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-1542120157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-1542120157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-1542120157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-1542120258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-1542120258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-1542120258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-1542120258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-1542120258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-1542120258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299108.10.0PREDICTED: myb family transcription factor APL isoform X1
RefseqXP_011464128.10.0PREDICTED: myb family transcription factor APL isoform X1
SwissprotQ94A571e-129PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A2P6QWK30.0A0A2P6QWK3_ROSCH; Putative sterol 14-alpha-demethylase transcription factor MYB-HB-like family
STRINGXP_004299108.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133672126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-118G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]