PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00001974.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 375aa MW: 43697.5 Da PI: 7.3328 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 102.8 | 1.8e-32 | 84 | 186 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L+ FANhyb_rscf00001974.1.g00001.1 84 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFQDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKRLD 162 89***************************966778999***************************************** PP TT-EEEEEE-SSSEE..EEEEE-S CS B3 76 egDfvvFkldgrsefelvvkvfrk 99 +gD+v F+++ r++ l++ ++r+ FANhyb_rscf00001974.1.g00001.1 163 AGDIVSFERSVRDSNVLYIDWRRR 186 ********9977888899999997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-42 | 78 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-31 | 80 | 188 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-27 | 82 | 177 | No hit | No description |
SMART | SM01019 | 4.1E-25 | 84 | 187 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-29 | 84 | 186 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.185 | 84 | 187 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 375 aa Download sequence Send to blast |
MEYYVKGDKK GYSEKEEDQE EEEEDKNHII NSKYLSPSYN YGSSSSSQTA EAINFMDLSI 60 RNAKDDDNSN KNDWPPNSER EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDSSTNEKG 120 LLLNFQDRTG KPWRFRYSYW NSSQSYVMTK GWSRFVKDKR LDAGDIVSFE RSVRDSNVLY 180 IDWRRRPPPP LPPNQASYWG GGGRFYSLQR TPSMSMPLRH HEQFHYNIHH PYHHQYQYHQ 240 MNPYQLQQQH HQHQQYYHQS VISPAVVIDS VPLVQHHPHH HVKTMSPTTN KRLRLFGVNM 300 ECSPMQEDEP EQCQILSSTV ASLSPHQHHH HLPSSSLSQP LELRLPNYAA PLPGAADQLL 360 SEKGKSTSLS FYLDP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-64 | 78 | 187 | 2 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-64 | 78 | 187 | 2 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306604.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1 | ||||
Swissprot | O82799 | 7e-77 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A2P6SIV8 | 0.0 | A0A2P6SIV8_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004306604.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2338 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46870.1 | 3e-66 | B3 family protein |