PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001780.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 409aa    MW: 46465.6 Da    PI: 9.5867
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001780.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.5e-1863109148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     +g WT+eEd  l+dav+++ +++Wk+Ia+++  gRt+ qc +rwqk+l
  FANhyb_rscf00001780.1.g00004.1  63 KGGWTKEEDRVLADAVEKYNSKNWKRIAECVR-GRTDVQCLHRWQKVL 109
                                     688*****************************.************986 PP
2Myb_DNA-binding57.33.5e-18115161148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     +g W++eEd+l++++v++ G++ W+ Ia+ ++ gR +kqc++rw+++l
  FANhyb_rscf00001780.1.g00004.1 115 KGFWSKEEDDLIIELVAKQGNKKWSEIAKSLP-GRIGKQCRERWHNHL 161
                                     688*****************************.*************97 PP
3Myb_DNA-binding52.51.2e-16167209145
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                     r +WT eE+++l++ +k +G++ W+ Ia+ ++ gRt++++k++w+
  FANhyb_rscf00001780.1.g00004.1 167 RTAWTNEEEQILIQSHKVYGNK-WAEIAKFLP-GRTENSIKNHWN 209
                                     679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.12758109IPR017930Myb domain
SuperFamilySSF466892.08E-1659115IPR009057Homeodomain-like
SMARTSM007179.9E-1662111IPR001005SANT/Myb domain
PfamPF002492.3E-1663109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2165123IPR009057Homeodomain-like
CDDcd001671.08E-1366109No hitNo description
PROSITE profilePS5129429.752110165IPR017930Myb domain
SuperFamilySSF466893.27E-31112208IPR009057Homeodomain-like
SMARTSM007171.7E-16114163IPR001005SANT/Myb domain
PfamPF139211.4E-18118176No hitNo description
CDDcd001671.66E-14118161No hitNo description
Gene3DG3DSA:1.10.10.604.4E-27124169IPR009057Homeodomain-like
PROSITE profilePS5129421.065166216IPR017930Myb domain
SMARTSM007175.1E-17166214IPR001005SANT/Myb domain
CDDcd001679.39E-13169209No hitNo description
Gene3DG3DSA:1.10.10.607.3E-23170216IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MVQVKECDPN MEKGVLLSLS PPVSDSSGDQ YNTALKPASA QVFVLDYCVC ILRMTGPTRR  60
STKGGWTKEE DRVLADAVEK YNSKNWKRIA ECVRGRTDVQ CLHRWQKVLS PDLVKGFWSK  120
EEDDLIIELV AKQGNKKWSE IAKSLPGRIG KQCRERWHNH LNPDIKRTAW TNEEEQILIQ  180
SHKVYGNKWA EIAKFLPGRT ENSIKNHWNC SVKKKLELRS FHLSDMESHK TQVGIRKTGL  240
DQIANFDKNV ETCSINLDLV LGTPKGRESL IKSSDKGTHS WLTKGAGADN KIKTPARNLY  300
YDKSAATFGP KVEQRKELHN NYGRLRDSNC LSDRHSINDC SITPSGDRQG SPYFHGKHQN  360
TIYPMSLLNN GLDAFDYNRR AGNFLKQPDH PVTVERIHES SKGSQGMYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-64632166159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-64632166159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308398.10.0PREDICTED: uncharacterized protein LOC101303074
TrEMBLA0A2P6SGP80.0A0A2P6SGP8_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004308398.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149761314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-82Homeodomain-like protein