PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001754.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 73aa    MW: 8546.83 Da    PI: 4.8364
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001754.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM522.4e-162173248
                             NAM  2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLp 48
                                     pGfrFhPtdeelv +yL  kve+kk      ++l++ i+++diyk++PwdLp
  FANhyb_rscf00001754.1.g00001.1 21 LPGFRFHPTDEELVGFYLPVKVEKKKintrisTRLDQLIRQIDIYKYDPWDLP 73
                                    69************************666654444457**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-131973IPR003441NAC domain
PROSITE profilePS5100519.0922073IPR003441NAC domain
PfamPF023654.6E-72263IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MEEAAKVKLK DGDEELEGGI LPGFRFHPTD EELVGFYLPV KVEKKKINTR ISTRLDQLIR  60
QIDIYKYDPW DLP
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303892.11e-44PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9ZVH06e-20FEZ_ARATH; Protein FEZ
TrEMBLA0A2P6S0G72e-33A0A2P6S0G7_ROSCH; Putative transcription factor NAM family
STRINGXP_004303892.15e-44(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114331739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.13e-22NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]