PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001707.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | GeBP | ||||||||
Protein Properties | Length: 396aa MW: 42818.9 Da PI: 7.6582 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 110 | 1.6e-34 | 170 | 261 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkeps 79 klfqrlws+eDei++L+G+ d+++k+g++p++d+ af+ef+kks++++vsk ql +Kirr++kKf+++v+k + + FANhyb_rscf00001707.1.g00001.1 170 KLFQRLWSDEDEIIILKGMNDYATKKGVDPYADMGAFHEFIKKSLKVDVSKVQLQDKIRRMRKKFENNVRK-----KHE 243 579*******************************************************************9.....566 PP DUF573 80 fskehdqkifelskkiWg 97 +k+h++k++elskk+Wg FANhyb_rscf00001707.1.g00001.1 244 PTKPHEKKTYELSKKVWG 261 79***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.5E-30 | 172 | 261 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MAPKRPSPLD EPPAASSSEE EQEASSEEAA SGSGSEESES ETEASEPPKT TSTAKPQPKK 60 PESAAAAKPQ SSSSGETETD SESESDGEII GNSKVHVKPI ASKPMEAVTP PPKATKPRSK 120 PAASPATAKS GTKRPNGGES EVIKDSKKAK KKGDDQEEDG VEEESSKKSK LFQRLWSDED 180 EIIILKGMND YATKKGVDPY ADMGAFHEFI KKSLKVDVSK VQLQDKIRRM RKKFENNVRK 240 KHEPTKPHEK KTYELSKKVW GGGEDLAGNT EQPKANGKAK AKSNQKGNSK TLASMKADLL 300 ASPEPSKEAE KSGAMKQCAS GSVSSEVIGF DKGFKELGLS ETIVQQGLEL IGGSKCAALK 360 DKWNELHVAE LELFVKRTEL MRNQAQMILE AIKSDH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 240 | RMRKKFENNVRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309669.1 | 0.0 | PREDICTED: mediator-associated protein 1 | ||||
TrEMBL | A0A2P6Q317 | 1e-166 | A0A2P6Q317_ROSCH; Putative transcription factor GeBP family | ||||
STRING | XP_004309669.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 1e-26 | DNA-binding storekeeper protein-related transcriptional regulator |