PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001707.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GeBP
Protein Properties Length: 396aa    MW: 42818.9 Da    PI: 7.6582
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001707.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731101.6e-34170261197
                          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkeps 79 
                                     klfqrlws+eDei++L+G+ d+++k+g++p++d+ af+ef+kks++++vsk ql +Kirr++kKf+++v+k     + +
  FANhyb_rscf00001707.1.g00001.1 170 KLFQRLWSDEDEIIILKGMNDYATKKGVDPYADMGAFHEFIKKSLKVDVSKVQLQDKIRRMRKKFENNVRK-----KHE 243
                                     579*******************************************************************9.....566 PP

                          DUF573  80 fskehdqkifelskkiWg 97 
                                      +k+h++k++elskk+Wg
  FANhyb_rscf00001707.1.g00001.1 244 PTKPHEKKTYELSKKVWG 261
                                     79***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.5E-30172261IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAPKRPSPLD EPPAASSSEE EQEASSEEAA SGSGSEESES ETEASEPPKT TSTAKPQPKK  60
PESAAAAKPQ SSSSGETETD SESESDGEII GNSKVHVKPI ASKPMEAVTP PPKATKPRSK  120
PAASPATAKS GTKRPNGGES EVIKDSKKAK KKGDDQEEDG VEEESSKKSK LFQRLWSDED  180
EIIILKGMND YATKKGVDPY ADMGAFHEFI KKSLKVDVSK VQLQDKIRRM RKKFENNVRK  240
KHEPTKPHEK KTYELSKKVW GGGEDLAGNT EQPKANGKAK AKSNQKGNSK TLASMKADLL  300
ASPEPSKEAE KSGAMKQCAS GSVSSEVIGF DKGFKELGLS ETIVQQGLEL IGGSKCAALK  360
DKWNELHVAE LELFVKRTEL MRNQAQMILE AIKSDH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228240RMRKKFENNVRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309669.10.0PREDICTED: mediator-associated protein 1
TrEMBLA0A2P6Q3171e-166A0A2P6Q317_ROSCH; Putative transcription factor GeBP family
STRINGXP_004309669.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-26DNA-binding storekeeper protein-related transcriptional regulator