PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001694.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 656aa MW: 75220.2 Da PI: 9.1487

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001694.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57	6.2e-18	40	157	1	90
FAR1 1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.........................teker 52 +fY+ Y++ vGFs+++ k +k+ k ++ i +r + Cskeg+ ++ k+k +++ FANhyb_rscf00001694.1.g00002.1 40 QFYSYYSYIVGFSTKRYKIEKRhvKGTEVIFRRAWACSKEGHCKTLKNKkqvpfvlkvgedgnekagtekskgkKKDVA 118 6*************99888766889999*******9998877789************999887666667 PP FAR1 53 rtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 r+ + trtgC a + vk++k +gk++v+k+ +eHnH la FANhyb_rscf00001694.1.g00002.1 119 REIKYTRTGCLAVMYVKRDKdTGKYHVSKFATEHNHGLA 157 78899**********99*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-15	40	157	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.4E-30	279	373	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.963	562	598	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0082	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
GIGGGFDSEW LSLLQGKNMK MLRLEDVKDI GFTSVQQAEQ FYSYYSYIVG FSTKRYKIEK 60 RHVKGTEVIF RRAWACSKEG HCKTLKNKKQ VPFVLKVGED GNEKAGTEKS KGKKKDVARE 120 IKYTRTGCLA VMYVKRDKDT GKYHVSKFAT EHNHGLACIS ERHFLRSHRH VSVQDIAEVL 180 ALQEAQVSTS VAYDYLVNQA GGQEFVGFML KDLYNKMDAN RKLNTEVGDA QAAMNWLKIK 240 GKEDPQFFCR YTKDADGRLA NLFWRDHGSL MDYEAYGDVL IIDSTYKTNI YGMPLVLFVG 300 ANNHRGSVVF ACALVSNEKE DTFTWVIEKF LASMKNNPPK SVVTDGDEAM RKVLSNLMPG 360 ARPRLCAWHI GRNVCQNVKN EEVQKKVGKM IYASHTIGEW EEAWQSLIVE YGLENNTWMS 420 SLYAKRERWA EAFCKGHFYG GMCSTQRCEG MNSKLKKRVG KFTRLLDFIS RIYRCIDRLR 480 DRAASDKFKS KNHLRKFDTH MKALEEEAFN TFTDDIFLVI KGQIRMESMF FVSNHVIFGD 540 GKNMMFYVSQ YDQPRRSWTV GYTSESSGLE DVYECNCKLF ESDGVPCCHI FCVMKCARVM 600 KFPKSLECER WTKCSKVNTY GNKACGNVTD NASQVIRGLY EVSFGEKGKA EFGRDR

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

GIGGGFDSEW LSLLQGKNMK MLRLEDVKDI GFTSVQQAEQ FYSYYSYIVG FSTKRYKIEK  60
RHVKGTEVIF RRAWACSKEG HCKTLKNKKQ VPFVLKVGED GNEKAGTEKS KGKKKDVARE  120
IKYTRTGCLA VMYVKRDKDT GKYHVSKFAT EHNHGLACIS ERHFLRSHRH VSVQDIAEVL  180
ALQEAQVSTS VAYDYLVNQA GGQEFVGFML KDLYNKMDAN RKLNTEVGDA QAAMNWLKIK  240
GKEDPQFFCR YTKDADGRLA NLFWRDHGSL MDYEAYGDVL IIDSTYKTNI YGMPLVLFVG  300
ANNHRGSVVF ACALVSNEKE DTFTWVIEKF LASMKNNPPK SVVTDGDEAM RKVLSNLMPG  360
ARPRLCAWHI GRNVCQNVKN EEVQKKVGKM IYASHTIGEW EEAWQSLIVE YGLENNTWMS  420
SLYAKRERWA EAFCKGHFYG GMCSTQRCEG MNSKLKKRVG KFTRLLDFIS RIYRCIDRLR  480
DRAASDKFKS KNHLRKFDTH MKALEEEAFN TFTDDIFLVI KGQIRMESMF FVSNHVIFGD  540
GKNMMFYVSQ YDQPRRSWTV GYTSESSGLE DVYECNCKLF ESDGVPCCHI FCVMKCARVM  600
KFPKSLECER WTKCSKVNTY GNKACGNVTD NASQVIRGLY EVSFGEKGKA EFGRDR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011470173.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004288699.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-82	FAR1-related sequence 5