PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001641.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 499aa    MW: 57856.9 Da    PI: 8.7875
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001641.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.41.6e-1111264972374
                            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                     ++ L +cA+av+s d+  a++lL+++++++spdg ++qRla+yf+++L+ rl++  +  ++ l +++ts    +e l a
  FANhyb_rscf00001641.1.g00003.1 126 TTMLNQCAQAVASYDQGTASELLKKIRQHSSPDGHATQRLAHYFANGLEVRLTGVRTPSFSPLLSRHTS---AAEILLA 201
                                     5789**************************************************666666666666665...9****** PP

                            GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skee 157
                                     +++f  ++P++++s ++aN++I++ +++e+r+HiiDf+is+G+QWp+L+q L++Rp+gpp+l iT+++ p++g   +e+
  FANhyb_rscf00001641.1.g00003.1 202 YEVFASTCPFITISRFLANRTIMKLAKNETRLHIIDFGISYGFQWPCLIQHLSERPHGPPKLHITAIELPQPGfrPTER 280
                                     ************************************************************************9****** PP

                            GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                                     +eet + La+++++++vpfe++v +a+++e+++ e+L++ ++E ++Vn+ ++l +++de+v  +s+rd+vLkl+k+++P
  FANhyb_rscf00001641.1.g00003.1 281 VEETMRLLARYCAKFNVPFEYKV-MAQKWETIRCEDLKIYRNELVVVNCLHRLRHIHDETVMENSPRDAVLKLIKNINP 358
                                     **********************9.8****************************************************** PP

                            GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                                     +++++   +  hn++ F++rf eal +y ++fd +ea++pre++ r+++Er + g++i+n++aceg er+er et++kW
  FANhyb_rscf00001641.1.g00003.1 359 NLFIHGVINGRHNTPFFATRFKEALLHYYTIFDIFEATIPREEKRRMVLERDIHGKDIMNIIACEGVERVERPETYKKW 437
                                     ******************************************************************************* PP

                            GRAS 316 rerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     + r  +aG+k++pl+++ +k+ak   + ++  + +r++e+ ++++ gWk+r  +++S+W+
  FANhyb_rscf00001641.1.g00003.1 438 QTRNVRAGLKQLPLDQELMKKAKKFSKLMDyHNDFRIDEDGDWMLHGWKGRIFTALSFWK 497
                                     ************************9999998899*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.44199476IPR005202Transcription factor GRAS
PfamPF035145.4E-109126497IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MQSLGQAGEA SKFRTNGNFD INDKERYQTN GLKGKKNHQR EDEQHPEEGR SSKQSVVSAD  60
DSEPQEIFDK VLLCQGDHHE EWGSCTPHCS MKREGTEQLQ QNRQSKGSKT NRSKQQNKDE  120
EAVDLTTMLN QCAQAVASYD QGTASELLKK IRQHSSPDGH ATQRLAHYFA NGLEVRLTGV  180
RTPSFSPLLS RHTSAAEILL AYEVFASTCP FITISRFLAN RTIMKLAKNE TRLHIIDFGI  240
SYGFQWPCLI QHLSERPHGP PKLHITAIEL PQPGFRPTER VEETMRLLAR YCAKFNVPFE  300
YKVMAQKWET IRCEDLKIYR NELVVVNCLH RLRHIHDETV MENSPRDAVL KLIKNINPNL  360
FIHGVINGRH NTPFFATRFK EALLHYYTIF DIFEATIPRE EKRRMVLERD IHGKDIMNII  420
ACEGVERVER PETYKKWQTR NVRAGLKQLP LDQELMKKAK KFSKLMDYHN DFRIDEDGDW  480
MLHGWKGRIF TALSFWKPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-461074981380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461320.10.0PREDICTED: scarecrow-like protein 30
SwissprotQ9XE581e-166SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2P6QJ230.0A0A2P6QJ23_ROSCH; Putative transcription factor GRAS family
STRINGXP_008222385.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-169SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]