PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001629.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family G2-like
Protein Properties Length: 464aa    MW: 50914.2 Da    PI: 7.5725
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001629.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.98.2e-22260304145
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                                     k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++
  FANhyb_rscf00001629.1.g00001.1 260 KARRCWSPDLHRRFVSALQMLGGSQVATPKQIRELMKVDGLTNDE 304
                                     68****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-8258311IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-17258311IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-16260304IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MGAASPSELT LECKPHSYSM LLKSFGDHHH QAASTTQNHD LKQLEEILSR LEEERLKIDA  60
FKRELPLSMQ LLTTAVEASR QQLQAFRSSS ANNQGPIRPV LEEFIPLKHS NSEGAEKQTN  120
SSDKANWMTS VQLWSQADAT KPKEQGDMGF NVSPKLALDT KQQRSYGGGA FHPFSKDIRN  180
SGPSPNLQPL PELALGSPEN KTGENMDQNK KCSELGENGI NCGVVSTTQD QQGKTTEGQT  240
STITTNTNTN TSTQNSSHRK ARRCWSPDLH RRFVSALQML GGSQVATPKQ IRELMKVDGL  300
TNDEKYRLHT RRPSPSPQAA GGPTPQLVVL GGIWVPPEYA TGGHNGPTAL YSPASHAPTH  360
YCATPMPQDF YTTAQQPPQS GHHQLHHHTL HHQLHVYRAG TTSRTQSSPE SDLRGNGDRS  420
ESIEDGKSES GSWKAGTESG EKGMASRRSE DREESNGSQI TLKF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288823.10.0PREDICTED: uncharacterized protein LOC101303940
SwissprotQ9ZQ851e-111EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A2P6RJ770.0A0A2P6RJ77_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004288823.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-102G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]