PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001563.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 916aa MW: 101367 Da PI: 6.8673

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001563.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.8	8.6e-18	324	423	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLk 75 f+k l+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L+ FANhyb_rscf00001563.1.g00001.1 324 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQ 401 89************************555567778***********99899999999.********* PP TT-EEEEEE-SSSEE..EEEEE- CS B3 76 egDfvvFkldgrsefelvvkvfr 98 +gD+v+F++++ e++l +++++ FANhyb_rscf00001563.1.g00001.1 402 AGDTVTFSRMD-PEGKLIMGFRK 423 ******876.77777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-28	318	427	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.68E-19	321	423	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.58E-21	322	423	No hit	No description
SMART	SM01019	1.8E-19	324	425	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-15	324	423	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.138	324	425	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.065	597	647	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.5E-10	602	644	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence Send to blast
MDPSACMNAY CGSSSSIEWK KGWALRSGRF ANLCHKCGSA YEQSVFCDVF HSKESGWREC 60 AQCGKRLHCG CIASRSLLDF LDGGGVKCTH CTKNSEPHPI ASDEKPDGPG TSKISELKST 120 PSDNHLDRSN VDNVKLIQLE NDKECNGLRN LLQSQNNETV GLLQKMKQDD VPAPVVEIGS 180 TGLSIFNQTS NVSSEGSKPV IYRGNLGIND MYESLPHTNL SMSLGAPSGY ANPFPGIVVD 240 EHTRTSSLFL QGARSRHLLP KPPKLSLATG LEENSTMASQ ARVARPPAEG RGRNQLLPRY 300 WPRITDQELQ QISGDPNSTI VPLFEKMLSA SDAGRIGRLV LPKACAEAYF PPISQPEGLP 360 LRIQDVKGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR MDPEGKLIMG 420 FRKASNSVAM QDTHLSAIHN GAHSSQTFFS GVIENLPVIS GYSGLLQSTK GMDPHLSALS 480 KQLTTAHGDL SWHKSENPES RAREGLLLQS LVVPERKRTR NIGSKSKRLL IDSQDVLEVK 540 LTWEEAQDLL RPPPAVKPST VMIEDLEFEE YEEPPVFGKR KYFHSPVNWI QNNKLCFREH 600 EQWAQCDGCS KWRRLPVDVL LPSKWICTDN VWDQNRCSCS APDELTPKEL ESFLRLSKEF 660 KKRRMATNHN PTQEHESSGL DALANAAILG DNVADPGTAS VATTTKHPRH RPGCSCIVCI 720 QPPSGKGKHK PSCTCNVCMT VKRRFKTLMI NKKKRQSERE AEIAGRNQLA WGPRDDAEVD 780 STSRHLSSHL DPSDNEAKSP NELESKSQLK MAESGKGKLD LNCHPGREVD LPAEPSQLSM 840 MSLLQVATLP LDSYLKQTGL TSLVTEQQTS SSSPVPPQAT EENEEQLNGD QCLVSVVQDQ 900 ESGGEERQDQ SQEDPL

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence Send to blast

MDPSACMNAY CGSSSSIEWK KGWALRSGRF ANLCHKCGSA YEQSVFCDVF HSKESGWREC  60
AQCGKRLHCG CIASRSLLDF LDGGGVKCTH CTKNSEPHPI ASDEKPDGPG TSKISELKST  120
PSDNHLDRSN VDNVKLIQLE NDKECNGLRN LLQSQNNETV GLLQKMKQDD VPAPVVEIGS  180
TGLSIFNQTS NVSSEGSKPV IYRGNLGIND MYESLPHTNL SMSLGAPSGY ANPFPGIVVD  240
EHTRTSSLFL QGARSRHLLP KPPKLSLATG LEENSTMASQ ARVARPPAEG RGRNQLLPRY  300
WPRITDQELQ QISGDPNSTI VPLFEKMLSA SDAGRIGRLV LPKACAEAYF PPISQPEGLP  360
LRIQDVKGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR MDPEGKLIMG  420
FRKASNSVAM QDTHLSAIHN GAHSSQTFFS GVIENLPVIS GYSGLLQSTK GMDPHLSALS  480
KQLTTAHGDL SWHKSENPES RAREGLLLQS LVVPERKRTR NIGSKSKRLL IDSQDVLEVK  540
LTWEEAQDLL RPPPAVKPST VMIEDLEFEE YEEPPVFGKR KYFHSPVNWI QNNKLCFREH  600
EQWAQCDGCS KWRRLPVDVL LPSKWICTDN VWDQNRCSCS APDELTPKEL ESFLRLSKEF  660
KKRRMATNHN PTQEHESSGL DALANAAILG DNVADPGTAS VATTTKHPRH RPGCSCIVCI  720
QPPSGKGKHK PSCTCNVCMT VKRRFKTLMI NKKKRQSERE AEIAGRNQLA WGPRDDAEVD  780
STSRHLSSHL DPSDNEAKSP NELESKSQLK MAESGKGKLD LNCHPGREVD LPAEPSQLSM  840
MSLLQVATLP LDSYLKQTGL TSLVTEQQTS SSSPVPPQAT EENEEQLNGD QCLVSVVQDQ  900
ESGGEERQDQ SQEDPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-69	302	431	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004302530.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2P6R8G3	0.0	A0A2P6R8G3_ROSCH; Putative chromatin regulator PHD family
STRING	XP_004302530.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11018	32	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]