PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001550.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YC
Protein Properties Length: 345aa    MW: 38103.6 Da    PI: 4.8737
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001550.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC56.75.5e-18671452098
                           NF-YC  20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                                     ++ +arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++ +v++ ++fdfl +iv r
  FANhyb_rscf00001550.1.g00001.1  67 NFDMARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSVHLKHCVQSYNVFDFLREIVSR 145
                                     6889***********************************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-2466131IPR009072Histone-fold
PfamPF008089.0E-1868130IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471134.0E-1977146IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MRILQGAMDE ELDIFEGERV HYWGSVVLKL AVILMLSTKS HQGCCTLIPP GQNIGLSMQP  60
LGSLFTNFDM ARIKKIMQAD EDVGKIALAV PVLVSKALEL FLQDLCDRTY EITLQRGAKT  120
MNSVHLKHCV QSYNVFDFLR EIVSRVPDYG HGHSDAAASA DDRAITKRRK PPGDECIDSD  180
EELKRSKMLE VSHGSSSGRG RGRGRGRGRG RGARTTEREP VHHETESEPC TSLQQSSKPN  240
VNPAMVVDDV SESKDLLKEN VSVPDESDPT VRNFDLNADV HEKEDTKAAA AAAQASSAAP  300
TSETKHEEYP GWSLSDVDKM AIDPLQLAQL SKRLDEDEED YDEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A8e-17681311275Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200210RGRGRGRGRGR
2202211RGRGRGRGRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307213.11e-156PREDICTED: dr1-associated corepressor
TrEMBLA0A2P6SAU01e-153A0A2P6SAU0_ROSCH; Putative transcription factor Hap3/NF-YB family
STRINGXP_004307213.11e-156(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-70nuclear factor Y, subunit C11