PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001550.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NF-YC | ||||||||
Protein Properties | Length: 345aa MW: 38103.6 Da PI: 4.8737 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 56.7 | 5.5e-18 | 67 | 145 | 20 | 98 |
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++ +arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl +iv r FANhyb_rscf00001550.1.g00001.1 67 NFDMARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSVHLKHCVQSYNVFDFLREIVSR 145 6889***********************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.0E-24 | 66 | 131 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.0E-18 | 68 | 130 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 4.0E-19 | 77 | 146 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MRILQGAMDE ELDIFEGERV HYWGSVVLKL AVILMLSTKS HQGCCTLIPP GQNIGLSMQP 60 LGSLFTNFDM ARIKKIMQAD EDVGKIALAV PVLVSKALEL FLQDLCDRTY EITLQRGAKT 120 MNSVHLKHCV QSYNVFDFLR EIVSRVPDYG HGHSDAAASA DDRAITKRRK PPGDECIDSD 180 EELKRSKMLE VSHGSSSGRG RGRGRGRGRG RGARTTEREP VHHETESEPC TSLQQSSKPN 240 VNPAMVVDDV SESKDLLKEN VSVPDESDPT VRNFDLNADV HEKEDTKAAA AAAQASSAAP 300 TSETKHEEYP GWSLSDVDKM AIDPLQLAQL SKRLDEDEED YDEEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 8e-17 | 68 | 131 | 12 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 210 | RGRGRGRGRGR |
2 | 202 | 211 | RGRGRGRGRG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307213.1 | 1e-156 | PREDICTED: dr1-associated corepressor | ||||
TrEMBL | A0A2P6SAU0 | 1e-153 | A0A2P6SAU0_ROSCH; Putative transcription factor Hap3/NF-YB family | ||||
STRING | XP_004307213.1 | 1e-156 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1728 | 34 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-70 | nuclear factor Y, subunit C11 |