PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001516.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bZIP | ||||||||
Protein Properties | Length: 115aa MW: 13331.7 Da PI: 8.5344 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 74.3 | 1.6e-23 | 12 | 74 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L+ eN +L++e+++++ e+++l se+ FANhyb_rscf00001516.1.g00001.1 12 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKDENATLRSEVNRIRSEYEQLLSEN 74 89**********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 7.8E-17 | 9 | 71 | No hit | No description |
SMART | SM00338 | 4.6E-22 | 12 | 76 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.4E-22 | 12 | 74 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.242 | 14 | 77 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.63E-12 | 15 | 71 | No hit | No description |
CDD | cd14702 | 3.02E-14 | 17 | 67 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 19 | 34 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MSVLTNLNQL DERELKRQRR KQSNRESARR SRLRKQAECD ELAQRAEVLK DENATLRSEV 60 NRIRSEYEQL LSENASLKVR LGEIPGHEDL RSGRSDQHLS NDTNQTAQTE LHGGH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 34 | RRSRLRK |
2 | 28 | 35 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011465109.1 | 2e-67 | PREDICTED: transcription factor HBP-1a-like | ||||
Refseq | XP_011465110.1 | 2e-67 | PREDICTED: transcription factor HBP-1a-like | ||||
Swissprot | Q84LG2 | 1e-32 | BZP68_ARATH; bZIP transcription factor 68 | ||||
TrEMBL | A0A2P6PAM5 | 3e-65 | A0A2P6PAM5_ROSCH; Putative transcription factor bZIP family | ||||
STRING | XP_004300190.1 | 6e-67 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4017 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32150.1 | 6e-35 | basic region/leucine zipper transcription factor 68 |
Publications ? help Back to Top | |||
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