PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001483.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | HSF | ||||||||
Protein Properties | Length: 345aa MW: 40004.9 Da PI: 5.2267 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.4 | 3.5e-36 | 21 | 113 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 Fl+k+yei++d+++++++sws+ +nsfvv+d++ fa ++LpkyFkh+nf+SFvRQLn+YgFkkv++++ we FANhyb_rscf00001483.1.g00001.1 21 FLSKTYEIVDDSTTNHIVSWSKANNSFVVWDPQAFAISLLPKYFKHNNFSSFVRQLNTYGFKKVDTDR---------WE 90 9****************************************************************999.........** PP EEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 81 FkhksFkkgkkellekikrkkse 103 F+h+ F +g+k+ll++i++++++ FANhyb_rscf00001483.1.g00001.1 91 FAHEVFLRGQKHLLKNIRKRRNT 113 *****************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.5E-39 | 14 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.3E-56 | 17 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.94E-35 | 18 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.9E-31 | 21 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-19 | 21 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-19 | 59 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 60 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-19 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MNPQSLPVPM ERLNEQCPPP FLSKTYEIVD DSTTNHIVSW SKANNSFVVW DPQAFAISLL 60 PKYFKHNNFS SFVRQLNTYG FKKVDTDRWE FAHEVFLRGQ KHLLKNIRKR RNTSHNVHYA 120 NSQQGLDSCI EVGSFGSLDG EIDQLRRDKE VLMGELVKLR QQQQTTRLHL HGMEDRLKRT 180 EMKQQQMMNF LARAMQNPNF VHQLAQKKDR KKQLEDAIRK KRRRPIEGPS SIEVGELGQG 240 GGEAFVKVEP QYYGDITELD VSGLDTFVVE MQGTDENQLV HDGQECMEKE EEHERRSKDL 300 SEVFWEEFLN DGVDEDVEVP GVQEEDEEDV NVLIEQLGCL VSKPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-26 | 6 | 110 | 14 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-26 | 6 | 110 | 14 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-26 | 6 | 110 | 14 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 220 | KDRKKQLEDAIRKK |
2 | 209 | 223 | RKKQLEDAIRKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004296577.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b | ||||
Swissprot | Q9LUH8 | 1e-119 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A2P6QPK0 | 0.0 | A0A2P6QPK0_ROSCH; Putative transcription factor HSF-type-DNA-binding family | ||||
STRING | XP_004296577.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-104 | heat shock transcription factor A6B |