PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001466.1.g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | AP2 | ||||||||
Protein Properties | Length: 566aa MW: 63123.1 Da PI: 7.1035 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.8 | 2.8e-13 | 282 | 332 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ +Aa+a+++a+ k +g FANhyb_rscf00001466.1.g00002.1 282 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIDAARAYDKAAIKCNG 332 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.172 | 161 | 247 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-14 | 161 | 247 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-21 | 161 | 253 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-7 | 215 | 248 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-8 | 282 | 332 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-16 | 282 | 342 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.85E-24 | 282 | 342 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-16 | 283 | 340 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-31 | 283 | 346 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.29 | 283 | 340 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-6 | 284 | 295 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-6 | 322 | 342 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MWDLNDCPDQ RPVDDESEGC SSQKTNSGDG DDDKGKRVGS VSNSSSSAVV IEDGSDVDED 60 ANPSRKRGSK IFGFSVTDDN AVDGADPHPV THQFFPVDDS SETGAVAASS SSFPRAHWVG 120 VKFCQVDSAG PGKPAERSPQ QNQQQQPMKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWA 180 AQSYSSSSFF FFFFFLDSGI AGSKFILVDS TQHMQLLGGF DTAHAAARAY DRAAIKFRGV 240 EADINFNIED YEEDLKQMSN LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG 300 QFLGKKYVYL GLFDTEIDAA RAYDKAAIKC NGKEAVTNFD PSIYESELNS TEPASGNNNA 360 ADHNLDLSLG NSNRKKNNPA FGTAQNHSHQ NTAVEQQQQQ QQQQQSASMQ FESDWRNNQG 420 FRAKPREDND IRRRDGYLEN EAMQLLLRTN LQSPSPTQMH KYGQFNQFRS PAGETPAQMP 480 SHFPPHSFNY PNYPVQFPSS SEVGARIGSD LTLSMSDRQQ WQPSHPSELF ASAAASSGFP 540 PQIRPPPSQN GWLQKNNGFH SLARRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004288014.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | P47927 | 1e-120 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A3Q8TD96 | 0.0 | A0A3Q8TD96_FRAAN; Transcription factor AP215 | ||||
STRING | XP_004288014.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3784 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-113 | AP2 family protein |