PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001325.1.g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Dof | ||||||||
Protein Properties | Length: 369aa MW: 39542.3 Da PI: 9.2552 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.3 | 1.5e-37 | 75 | 135 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+s ntkfCy+nnysl+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+ FANhyb_rscf00001325.1.g00003.1 75 PETALKCPRCESINTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 135 67899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-32 | 59 | 128 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.3E-32 | 78 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.05 | 79 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 81 | 117 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MVFSSIPGYL DPPNNWQQQQ STHHHQQQGG GTDQNHSHLL PPPPPSSRDG GNGGAGTIRP 60 GSMSDRARQA KLPQPETALK CPRCESINTK FCYFNNYSLT QPRHFCKTCR RYWTRGGALR 120 SVPVGGGCRR NKRSKRSKSP ASASAADHHQ RQGGAGSSSS TVSNSNSCST SENLLGHLAP 180 PPPHQFPFLP SLHHLSDYNS GGLSFGGIQQ QPSGVEFHSQ NIGASGSSSG GIGSILSTGL 240 AEHWRSSLQH LQVQQGQQFP FLANLEPPSS HGLYQFEGNQ NNNAQDTGTY GRGGAQLLSK 300 ALVDSSIGAT QMANVKMEES QALNMSRNFL GSLGNDHHQQ YWSSTTSAGG INNAWTDLSG 360 FTSSTSHLL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00407 | DAP | Transfer from AT3G55370 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011469789.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4 isoform X1 | ||||
TrEMBL | A0A2P6SK99 | 0.0 | A0A2P6SK99_ROSCH; Putative transcription factor C2C2-Dof family | ||||
STRING | XP_004308873.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 7e-41 | Dof family protein |