PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001325.1.g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Dof
Protein Properties Length: 369aa    MW: 39542.3 Da    PI: 9.2552
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001325.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.31.5e-3775135262
                          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                                     +e+alkcprC+s ntkfCy+nnysl+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+
  FANhyb_rscf00001325.1.g00003.1  75 PETALKCPRCESINTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 135
                                     67899*****************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3259128IPR003851Zinc finger, Dof-type
PfamPF027015.3E-3278133IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0579133IPR003851Zinc finger, Dof-type
PROSITE patternPS01361081117IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVFSSIPGYL DPPNNWQQQQ STHHHQQQGG GTDQNHSHLL PPPPPSSRDG GNGGAGTIRP  60
GSMSDRARQA KLPQPETALK CPRCESINTK FCYFNNYSLT QPRHFCKTCR RYWTRGGALR  120
SVPVGGGCRR NKRSKRSKSP ASASAADHHQ RQGGAGSSSS TVSNSNSCST SENLLGHLAP  180
PPPHQFPFLP SLHHLSDYNS GGLSFGGIQQ QPSGVEFHSQ NIGASGSSSG GIGSILSTGL  240
AEHWRSSLQH LQVQQGQQFP FLANLEPPSS HGLYQFEGNQ NNNAQDTGTY GRGGAQLLSK  300
ALVDSSIGAT QMANVKMEES QALNMSRNFL GSLGNDHHQQ YWSSTTSAGG INNAWTDLSG  360
FTSSTSHLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469789.10.0PREDICTED: dof zinc finger protein DOF2.4 isoform X1
TrEMBLA0A2P6SK990.0A0A2P6SK99_ROSCH; Putative transcription factor C2C2-Dof family
STRINGXP_004308873.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.17e-41Dof family protein