PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001300.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 117aa    MW: 13055.2 Da    PI: 11.0564
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001300.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.4e-281059251
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstg+lye++s
  FANhyb_rscf00001300.1.g00004.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGRLYEFAS 59
                                    8***********************************************86 PP
2SRF-TF87.95.7e-2861110251
                                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                     ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstg+lye++s
  FANhyb_rscf00001300.1.g00004.1  61 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGRLYEFAS 110
                                     8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.525161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-27261IPR002100Transcription factor, MADS-box
CDDcd002651.57E-36264No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-283859IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-2461112IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.46461112IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-2861111IPR002100Transcription factor, MADS-box
PfamPF003191.7E-2561108IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGRLYEFAST  60
RIDNSTSRQV TFSKRRNGLL KKAKELAILC DAEVGVMIFS STGRLYEFAS TSLAFHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-191113163MEF2C
5f28_B2e-191113163MEF2C
5f28_C2e-191113163MEF2C
5f28_D2e-191113163MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021659609.11e-35MADS-box transcription factor ANR1-like isoform X3
SwissprotQ6EP491e-33MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A4D6NG505e-46A0A4D6NG50_VIGUN; MADS-box transcription factor
STRINGXP_010091612.13e-39(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-34AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]