PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001265.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family SBP
Protein Properties Length: 455aa    MW: 50343.8 Da    PI: 8.7484
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001265.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1314.2e-41186261277
                                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                     CqvegC+ dls+ak+yhr+h++C  hsk+p+v+v+g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q
  FANhyb_rscf00001265.1.g00003.1 186 CQVEGCSIDLSSAKDYHRKHRICANHSKSPNVIVNGVERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQ 261
                                     **************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.2E-33179247IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.154183260IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-38184264IPR004333Transcription factor, SBP-box
PfamPF031106.7E-32186259IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MNSPMVMEWN EKPLSLWDWE NVFMFGAKVT ENAKKLQPTG WSVEGDRGMN SEYFYSPGVD  60
GGSGVSGSDL GDGTSKSSKS GSVSSSVGES KKSNFSFETF EGFSKNFADR KQSARDIEAF  120
GSSPTEISAG SSEPLLSLKL GKRMYFEDVC AGNNVKTSTV SVISTPMGTK AKRFKSIGQS  180
TVATYCQVEG CSIDLSSAKD YHRKHRICAN HSKSPNVIVN GVERRFCQQC SRFHGLSEFD  240
EKKRSCRRRL SDHNARRRKP QLGALGDSAR HSSSLYSADG RQHMSLVLDQ APFAYSRHSR  300
NLSWDAACSF RKHTPGSVTM LYQDSCRLSP SNGTTSQVLN RGAEESMISF NLDAPQNLNR  360
ALSLLSTSSW ASSEAKPVSL DNTNHSYHTN IPQPAMQAMT QGLPLPSDYW QNEQASLVTT  420
QVNVWHSQSN GSNQYQDLHM FKGPFEFNYS TNQFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-261862591184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241258KKRSCRRRLSDHNARRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004310087.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_011457487.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_011457488.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_011457489.10.0PREDICTED: squamosa promoter-binding-like protein 12
TrEMBLA0A2P6R0D00.0A0A2P6R0D0_ROSCH; Putative transcription factor SBP family
STRINGXP_004310087.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-63squamosa promoter binding protein-like 2