PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001252.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

AP2

Protein Properties

Length: 431aa MW: 47256.8 Da PI: 9.3352

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001252.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54	4e-17	125	174	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aaka+++a+ k++g FANhyb_rscf00001252.1.g00002.1 125 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAAKAYDRAAIKFRG 174 78*****************......55**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	4.38E-15	125	182	IPR016177	DNA-binding domain
Pfam	PF00847	4.1E-9	125	174	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.214	126	182	IPR001471	AP2/ERF domain
SMART	SM00380	2.9E-31	126	188	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-16	126	182	IPR001471	AP2/ERF domain
CDD	cd00018	1.40E-23	126	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MLDLNVDIVS STIDQSSYDE KSRALEAEKL REDSGTSDSS VVNAEEDSYS NNTSPFIFDI 60 LKKDKHGLCN NREDQIVPSP EFATKSLFPV TGDGGGRSRR AELKVVQQKQ QQARKSRRGP 120 RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHS AAKAYDRAAI KFRGVDADIN 180 FVLSDYEEDL KQMRHLNKEE FVHVLRRQSN GASRGNSKFR GVAAAAATAA AVPKIGPFEV 240 HMGQLIPGNK LIKGNGREGL SNFDPSIYEG EVVVGASTEG SGHNLDLSLG ISQPSTGEKR 300 KAFEILSKER PMVNGSASAA GGQPLHALAM LSKHPALYPE IYPGFLQKTE EMATDHHKRI 360 QAVSSPRFSN WAWQMNGNNN NVTPVPVFSI AASSGFSSSI TTVPPSATNH LPPILQDSST 420 YNLRLPFPTS L

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MLDLNVDIVS STIDQSSYDE KSRALEAEKL REDSGTSDSS VVNAEEDSYS NNTSPFIFDI  60
LKKDKHGLCN NREDQIVPSP EFATKSLFPV TGDGGGRSRR AELKVVQQKQ QQARKSRRGP  120
RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHS AAKAYDRAAI KFRGVDADIN  180
FVLSDYEEDL KQMRHLNKEE FVHVLRRQSN GASRGNSKFR GVAAAAATAA AVPKIGPFEV  240
HMGQLIPGNK LIKGNGREGL SNFDPSIYEG EVVVGASTEG SGHNLDLSLG ISQPSTGEKR  300
KAFEILSKER PMVNGSASAA GGQPLHALAM LSKHPALYPE IYPGFLQKTE EMATDHHKRI  360
QAVSSPRFSN WAWQMNGNNN NVTPVPVFSI AASSGFSSSI TTVPPSATNH LPPILQDSST  420
YNLRLPFPTS L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250\|UniProtKB:P47927, ECO:0000269\|PubMed:17144896, ECO:0000269\|PubMed:22003982, ECO:0000269\|PubMed:28066457, ECO:0000305\|PubMed:26631749}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269\|PubMed:20017947, ECO:0000269\|PubMed:22003982, ECO:0000305\|PubMed:26631749, ECO:0000305\|PubMed:28066457}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307425.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
Swissprot	Q8H443	3e-71	AP23_ORYSJ; APETALA2-like protein 3
TrEMBL	A0A3Q8TA35	0.0	A0A3Q8TA35_FRAAN; Transcription factor AP218
STRING	XP_004307425.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2807	34	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	4e-61	related to AP2.7

Publications ? help Back to Top
Lee DY,An G Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] Wang L, et al. Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] Dai Z,Wang J,Zhu M,Miao X,Shi Z OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]