PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001246.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Dof | ||||||||
Protein Properties | Length: 303aa MW: 32852.1 Da PI: 8.785 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.8 | 1.4e-39 | 41 | 102 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCkaCrryWt GG+lrn+PvGgg+rknk+sss FANhyb_rscf00001246.1.g00001.1 41 KESALNCPRCNSTNTKFCYYNNYSLTQPRYFCKACRRYWTDGGSLRNIPVGGGSRKNKRSSS 102 67899*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-27 | 34 | 93 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-33 | 43 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.078 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 47 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDTAQWPQGI VVKPIEEIVT NTCPKPSSAN NLERKLARPQ KESALNCPRC NSTNTKFCYY 60 NNYSLTQPRY FCKACRRYWT DGGSLRNIPV GGGSRKNKRS SSSSSSTPTS NISNNSSKRL 120 PDLIQPQGNQ GNNQGQDLNL GFPSNQVFAH HQIPNIDQNS DKNNNSSSTS TTTTASHLSA 180 LELLTGLTSR GLNSFMPMPV PNSDPNSNNN SGSVYTSGFP MSELMIKPTL NFSLDGLGSG 240 YGSALQGHHV QENSGRLLFP FEDLKQVSGS GGGIDHHQQN NKEHHHGGDS TGYWTGMLGG 300 GSW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300484.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
Swissprot | Q8LAP8 | 1e-63 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A2P6P3Y4 | 1e-174 | A0A2P6P3Y4_ROSCH; Putative transcription factor C2C2-Dof family | ||||
STRING | XP_004300484.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64620.1 | 2e-47 | Dof family protein |
Publications ? help Back to Top | |||
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