PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001233.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 953aa    MW: 104741 Da    PI: 7.6794
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001233.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-18130188357
                                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  FANhyb_rscf00001233.1.g00002.1 130 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 188
                                     5679*****************************************************97 PP
2START165.83e-522744822205
                                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEE CS
                           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakae 80 
                                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++ ++
  FANhyb_rscf00001233.1.g00002.1 274 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDLPSWLRDCRTVD 351
                                     7899******************************************************.******************** PP

                                     EEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEE CS
                           START  81 tlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgil 153
                                     +l+v+ ++  g+++l +++l+a+++l+p  df+++Ry+  l++g++v++ +S+ ++q+ p+    +++vRae+lpSg+l
  FANhyb_rscf00001233.1.g00002.1 352 VLNVLPTAngGTIELLYMQLYAPTTLAPaCDFWMLRYTSVLEDGSLVVCVRSLKNTQNGPSmppVQHFVRAEMLPSGYL 430
                                     ******9999*************************************************9988899************* PP

                                     EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                           START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                                     i+p+++g+s +++v+h+dl+   ++++lr+l++s+++ ++k+++a+l+++++
  FANhyb_rscf00001233.1.g00002.1 431 IRPCEGGGSIIHIVDHMDLEPCGVPEVLRPLYESSAVLAQKMTMAALRQLRQ 482
                                     ************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.483125189IPR001356Homeobox domain
SMARTSM003891.2E-15127193IPR001356Homeobox domain
SuperFamilySSF466896.84E-17130193IPR009057Homeodomain-like
CDDcd000861.14E-16130190No hitNo description
PfamPF000463.5E-16131188IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-18132188IPR009057Homeodomain-like
CDDcd146861.35E-6182221No hitNo description
PROSITE profilePS5084822.472264492IPR002913START domain
CDDcd088755.60E-75268484No hitNo description
SuperFamilySSF559611.92E-35273484No hitNo description
Gene3DG3DSA:3.30.530.201.5E-19273479IPR023393START-like domain
SMARTSM002346.0E-40273483IPR002913START domain
PfamPF018527.5E-50274482IPR002913START domain
PfamPF086708.7E-10846891IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 953 aa     Download sequence    Send to blast
MIMLYNPISA KAGFPFRLRL QLIKDIEGRA VPVMPLVNPI KHPHSQPLPR FIVLVSNSGS  60
ILRSVLFADP EEERELYSFA FGAAEIRGQT PFQLRIVLSL VGLYPNPKPC ENWKMAMSCK  120
DGKGVMDNGK YVRYTPEQVE ALERLYHECP KPSSIRRQQL IRECPILSNI EPKQIKVWFQ  180
NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SHLVYENGYF RQHTQTTTLA  240
TKDTSCESVV TSGQHHLTPQ HPPRDASPAG LLSIAEETLA EFLSKATGTA VEWVQMPGMK  300
PGPDSIGIVA ISHGCPGVAA RACGLVGLEP TRVAEILKDL PSWLRDCRTV DVLNVLPTAN  360
GGTIELLYMQ LYAPTTLAPA CDFWMLRYTS VLEDGSLVVC VRSLKNTQNG PSMPPVQHFV  420
RAEMLPSGYL IRPCEGGGSI IHIVDHMDLE PCGVPEVLRP LYESSAVLAQ KMTMAALRQL  480
RQIAHEVSQS SVTGWGRRPA ALRALSQRLS RGFNEALNGF TDEGWSLMGN DGMDDVTILI  540
NSSPDKLMGL NLSFGNGFPA VSNAVLCAKA SMLLQNVPPA ILLRFLREHR SEWADNNIDA  600
YSAAAVKVGP CSLAGSRVGS FGGQVILPLA HTIEHEEFLE VIKLEGIGHS PDDPMMQTRE  660
MFLLQGEFFL LVSYLILDCQ SLASIVKTHR FLFKIHNGTF KMLCSGMDET AVGSCAELIF  720
APIDASFADD APLLPSGFRI IPLDSGKEAS SPNRTLDLAS ALEIGPTGNR ASSEYSANAG  780
CVRSVMTIAF EFACESHMQE HVASMARQYV RSIISSVQRV ALALSPSHLS SHAGLRSPLG  840
TPEAQTLARW ICNSYRGYLG VELLKSCNEG SESNLKSLWH HSDAIMCCSL KYLYGKSTIL  900
PSMGVVHIVC ALYFWITCTS LKTSSGGGRV GSVSIIDDVD VKGSKMLMSR VQT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302866.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2P6RXA70.0A0A2P6RXA7_ROSCH; Putative transcription factor & lipid binding Homobox-WOX family
STRINGXP_004302866.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.30.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]