PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001204.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 360aa MW: 38804.5 Da PI: 9.0595

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001204.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.1e-38	80	140	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nn+slsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkks+ FANhyb_rscf00001204.1.g00003.1 80 PETALKCPRCESTNTKFCYFNNHSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSK 140 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-34	64	136	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-32	83	138	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.078	84	138	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	86	122	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MVFSSIPVYL DPPNWHQQPN HPLGSGSTEN HAQLPPLPPA QFGTHVGGGG GTDGSGGSGT 60 GSIRPNSMAD RARLAKIPQP ETALKCPRCE STNTKFCYFN NHSLSQPRHF CKTCRRYWTR 120 GGALRNVPVG GGCRRNKKSK TSSSSRSKSP ASSTENQQMR ETGSNNPTGL INQLSQPQAQ 180 SLPFLESIQN LSRYGGAGNM GLNSFNEIQQ AQAQSTTDHM GFQIGAGNNM MNLSGGLGMD 240 QWRNLQQIPF LGSTGFESSS TTGLYPFQNT TEGVDQDSQL RTTNSRVTTT HQVPPVKVED 300 HNHGVSLTRP FLGISGNNIN SSNSNINDNN DNNNQNQFWG GNAWADLSGN LNSSSTSHLL

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MVFSSIPVYL DPPNWHQQPN HPLGSGSTEN HAQLPPLPPA QFGTHVGGGG GTDGSGGSGT  60
GSIRPNSMAD RARLAKIPQP ETALKCPRCE STNTKFCYFN NHSLSQPRHF CKTCRRYWTR  120
GGALRNVPVG GGCRRNKKSK TSSSSRSKSP ASSTENQQMR ETGSNNPTGL INQLSQPQAQ  180
SLPFLESIQN LSRYGGAGNM GLNSFNEIQQ AQAQSTTDHM GFQIGAGNNM MNLSGGLGMD  240
QWRNLQQIPF LGSTGFESSS TTGLYPFQNT TEGVDQDSQL RTTNSRVTTT HQVPPVKVED  300
HNHGVSLTRP FLGISGNNIN SSNSNINDNN DNNNQNQFWG GNAWADLSGN LNSSSTSHLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011461229.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A2P6QIK9	0.0	A0A2P6QIK9_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004294531.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	1e-47	DNA binding with one finger 2.4