PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001203.1.g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 1234aa MW: 137927 Da PI: 6.8863 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.7 | 2.2e-39 | 1093 | 1192 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77 +CaaC++lrr+C++dC++apyfp ++p++fa vh+++Gasnv ++l++lp++ r +a+++l+yeAe+r++dPvyG+v FANhyb_rscf00001203.1.g00002.1 1093 RCAACRYLRRRCPSDCIFAPYFPPNNPQRFASVHRIYGASNVARMLQQLPPDLRAQAADTLYYEAECRVEDPVYGCV 1169 6**************************************************************************** PP DUF260 78 gvilklqqqleqlkaelallkee 100 gv+++l++q+e++++ela+++++ FANhyb_rscf00001203.1.g00002.1 1170 GVLSRLHEQIEEAESELAKTRAN 1192 ******************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 2.5E-32 | 4 | 89 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 6.36E-35 | 5 | 87 | No hit | No description |
Pfam | PF14569 | 2.3E-39 | 10 | 86 | IPR027934 | Cellulose synthase, RING-type zinc finger |
Pfam | PF03552 | 0 | 355 | 1077 | IPR005150 | Cellulose synthase |
SuperFamily | SSF53448 | 4.41E-10 | 368 | 419 | IPR029044 | Nucleotide-diphospho-sugar transferases |
SuperFamily | SSF53448 | 4.41E-10 | 523 | 644 | IPR029044 | Nucleotide-diphospho-sugar transferases |
SuperFamily | SSF53448 | 4.41E-10 | 761 | 892 | IPR029044 | Nucleotide-diphospho-sugar transferases |
PROSITE profile | PS50891 | 25.595 | 1092 | 1193 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-39 | 1093 | 1190 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009833 | Biological Process | plant-type primary cell wall biogenesis | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0030244 | Biological Process | cellulose biosynthetic process | ||||
GO:0043255 | Biological Process | regulation of carbohydrate biosynthetic process | ||||
GO:0005768 | Cellular Component | endosome | ||||
GO:0005802 | Cellular Component | trans-Golgi network | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1234 aa Download sequence Send to blast |
MESEGETEAK PMKNLGGQVC QICGDNVGKT AAGEPFIACD VCSFPVCRPC YEYERKDGNQ 60 SCPQCKTRYK RHKGSPAILG DREEDGDADD GASEFNYTSE NQNEKQKIAE RMLSWHMTYG 120 RGEDIGGPNY DKEVSHNHIP LLTNGTEVSG ELSAASPGRL SMASPGASIG GKRIHPLPYA 180 SDVNQSPNLR VVDPVREFGS PGIGNVAWKE RVDGWKMKQD KNTIPMSTGQ ATSERGVGDI 240 DASTDVIVDD SLLNDEARQP LSRKVSIPSS RINPYRMVIV LRLVILCIFL HYRLTNPVRN 300 AYALWLISVI CEIWFAISWI LDQFPKWLPV NRETYLDRLS LRYDREGEPS QLAAVDIFVS 360 TVDPLKEPPM VTANTVLSIL AMDYPVDKIS CYVSDDGAAM LTFEALSETS EFARKWVPFC 420 KKYAIEPRAP EWYFSQKIDY LKDKVQPSFV KDRRAMKREY EEFKVRVNGL VAKATKVPEE 480 GWSMQDGTPW PGNNTRDHPG MIQVFLGQSG GLDAEGNELP RLVYVSREKR PGFQHHKKAG 540 AMNALVRVSA VLTNGPFLLN LDCDHYINNS KALREAMCFL MDPNLGKTVC YVQFPQRFDG 600 IDRNDRYANR NTVFFDINLR GLDGIQGPVY VGTGCVFNRT ALYGYEPPLK PKHKKAGVLS 660 SLCGGSRKKG SKSGKKGSDK KKSSKHVDPT VPIFSLEDIE EGVEGTGFDD EKSLLMSQMS 720 LEKRFGQSAV FVASTLMENG GVPQSATPET LLKEAIHVIS CGYEDKSDWG QEIGWIYGSV 780 TEDILTGFKM HARGWRSIYC MPKRPAFKGS APINLSDRLN QVLRWALGSV EILLSRHCPI 840 WYGYSGRLKW LERFAYVNTT IYPITAIPLL AYCTLPAVCL LTNKFIIPQI SNIASIWFIS 900 LFLSIFATGI LEMRWSGVGI DEWWRNEQFW VIGGVSAHLF AVVQGLLKVL AGIDTNFTVT 960 SKASDEDGDF AELYMFKWTT LLIPPTTLLI INLVGVVAGI SYAVNSGYQS WGPLFGKLFF 1020 AFWVIVHLYP FLKGLMGRQN RTPTIVVVWS ILLASIFSLL WVRVDPFTTR VTGPDVEILV 1080 YLPLDSRAMI SGRCAACRYL RRRCPSDCIF APYFPPNNPQ RFASVHRIYG ASNVARMLQQ 1140 LPPDLRAQAA DTLYYEAECR VEDPVYGCVG VLSRLHEQIE EAESELAKTR ANIVLNSDVG 1200 QQSQVQQIDD EVEDNSSLLQ AQTIVGQTQF GSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5jnp_A | 9e-76 | 398 | 523 | 3 | 128 | Probable cellulose synthase A catalytic subunit 8 [UDP-forming] |
5jnp_B | 9e-76 | 398 | 523 | 3 | 128 | Probable cellulose synthase A catalytic subunit 8 [UDP-forming] |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the primary cell wall formation, especially in roots. {ECO:0000269|PubMed:11340179, ECO:0000269|PubMed:12068120, ECO:0000269|PubMed:12119374, ECO:0000269|PubMed:12713541, ECO:0000269|PubMed:17878302, ECO:0000269|PubMed:17878303}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306536.1 | 0.0 | PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming] | ||||
Swissprot | Q941L0 | 0.0 | CESA3_ARATH; Cellulose synthase A catalytic subunit 3 [UDP-forming] | ||||
TrEMBL | A0A2P6S7L7 | 0.0 | A0A2P6S7L7_ROSCH; Cellulose synthase | ||||
STRING | XP_004306536.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 7e-40 | LOB domain-containing protein 24 |