PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001203.1.g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 1234aa    MW: 137927 Da    PI: 6.8863
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001203.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.2e-39109311921100
                          DUF260    1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77  
                                      +CaaC++lrr+C++dC++apyfp ++p++fa vh+++Gasnv ++l++lp++ r +a+++l+yeAe+r++dPvyG+v
  FANhyb_rscf00001203.1.g00002.1 1093 RCAACRYLRRRCPSDCIFAPYFPPNNPQRFASVHRIYGASNVARMLQQLPPDLRAQAADTLYYEAECRVEDPVYGCV 1169
                                      6**************************************************************************** PP

                          DUF260   78 gvilklqqqleqlkaelallkee 100 
                                      gv+++l++q+e++++ela+++++
  FANhyb_rscf00001203.1.g00002.1 1170 GVLSRLHEQIEEAESELAKTRAN 1192
                                      ******************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.5E-32489IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578506.36E-35587No hitNo description
PfamPF145692.3E-391086IPR027934Cellulose synthase, RING-type zinc finger
PfamPF0355203551077IPR005150Cellulose synthase
SuperFamilySSF534484.41E-10368419IPR029044Nucleotide-diphospho-sugar transferases
SuperFamilySSF534484.41E-10523644IPR029044Nucleotide-diphospho-sugar transferases
SuperFamilySSF534484.41E-10761892IPR029044Nucleotide-diphospho-sugar transferases
PROSITE profilePS5089125.59510921193IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3910931190IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009833Biological Processplant-type primary cell wall biogenesis
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0030244Biological Processcellulose biosynthetic process
GO:0043255Biological Processregulation of carbohydrate biosynthetic process
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0016760Molecular Functioncellulose synthase (UDP-forming) activity
Sequence ? help Back to Top
Protein Sequence    Length: 1234 aa     Download sequence    Send to blast
MESEGETEAK PMKNLGGQVC QICGDNVGKT AAGEPFIACD VCSFPVCRPC YEYERKDGNQ  60
SCPQCKTRYK RHKGSPAILG DREEDGDADD GASEFNYTSE NQNEKQKIAE RMLSWHMTYG  120
RGEDIGGPNY DKEVSHNHIP LLTNGTEVSG ELSAASPGRL SMASPGASIG GKRIHPLPYA  180
SDVNQSPNLR VVDPVREFGS PGIGNVAWKE RVDGWKMKQD KNTIPMSTGQ ATSERGVGDI  240
DASTDVIVDD SLLNDEARQP LSRKVSIPSS RINPYRMVIV LRLVILCIFL HYRLTNPVRN  300
AYALWLISVI CEIWFAISWI LDQFPKWLPV NRETYLDRLS LRYDREGEPS QLAAVDIFVS  360
TVDPLKEPPM VTANTVLSIL AMDYPVDKIS CYVSDDGAAM LTFEALSETS EFARKWVPFC  420
KKYAIEPRAP EWYFSQKIDY LKDKVQPSFV KDRRAMKREY EEFKVRVNGL VAKATKVPEE  480
GWSMQDGTPW PGNNTRDHPG MIQVFLGQSG GLDAEGNELP RLVYVSREKR PGFQHHKKAG  540
AMNALVRVSA VLTNGPFLLN LDCDHYINNS KALREAMCFL MDPNLGKTVC YVQFPQRFDG  600
IDRNDRYANR NTVFFDINLR GLDGIQGPVY VGTGCVFNRT ALYGYEPPLK PKHKKAGVLS  660
SLCGGSRKKG SKSGKKGSDK KKSSKHVDPT VPIFSLEDIE EGVEGTGFDD EKSLLMSQMS  720
LEKRFGQSAV FVASTLMENG GVPQSATPET LLKEAIHVIS CGYEDKSDWG QEIGWIYGSV  780
TEDILTGFKM HARGWRSIYC MPKRPAFKGS APINLSDRLN QVLRWALGSV EILLSRHCPI  840
WYGYSGRLKW LERFAYVNTT IYPITAIPLL AYCTLPAVCL LTNKFIIPQI SNIASIWFIS  900
LFLSIFATGI LEMRWSGVGI DEWWRNEQFW VIGGVSAHLF AVVQGLLKVL AGIDTNFTVT  960
SKASDEDGDF AELYMFKWTT LLIPPTTLLI INLVGVVAGI SYAVNSGYQS WGPLFGKLFF  1020
AFWVIVHLYP FLKGLMGRQN RTPTIVVVWS ILLASIFSLL WVRVDPFTTR VTGPDVEILV  1080
YLPLDSRAMI SGRCAACRYL RRRCPSDCIF APYFPPNNPQ RFASVHRIYG ASNVARMLQQ  1140
LPPDLRAQAA DTLYYEAECR VEDPVYGCVG VLSRLHEQIE EAESELAKTR ANIVLNSDVG  1200
QQSQVQQIDD EVEDNSSLLQ AQTIVGQTQF GSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5jnp_A9e-763985233128Probable cellulose synthase A catalytic subunit 8 [UDP-forming]
5jnp_B9e-763985233128Probable cellulose synthase A catalytic subunit 8 [UDP-forming]
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the primary cell wall formation, especially in roots. {ECO:0000269|PubMed:11340179, ECO:0000269|PubMed:12068120, ECO:0000269|PubMed:12119374, ECO:0000269|PubMed:12713541, ECO:0000269|PubMed:17878302, ECO:0000269|PubMed:17878303}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306536.10.0PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]
SwissprotQ941L00.0CESA3_ARATH; Cellulose synthase A catalytic subunit 3 [UDP-forming]
TrEMBLA0A2P6S7L70.0A0A2P6S7L7_ROSCH; Cellulose synthase
STRINGXP_004306536.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.17e-40LOB domain-containing protein 24
Publications ? help Back to Top
  1. Taylor NG,Scheible WR,Cutler S,Somerville CR,Turner SR
    The irregular xylem3 locus of Arabidopsis encodes a cellulose synthase required for secondary cell wall synthesis.
    Plant Cell, 1999. 11(5): p. 769-80
    [PMID:10330464]
  2. Caño-Delgado AI,Metzlaff K,Bevan MW
    The eli1 mutation reveals a link between cell expansion and secondary cell wall formation in Arabidopsis thaliana.
    Development, 2000. 127(15): p. 3395-405
    [PMID:10887094]
  3. Richmond T
    Higher plant cellulose synthases.
    Genome Biol., 2000. 1(4): p. REVIEWS3001
    [PMID:11178255]
  4. Ellis C,Turner JG
    The Arabidopsis mutant cev1 has constitutively active jasmonate and ethylene signal pathways and enhanced resistance to pathogens.
    Plant Cell, 2001. 13(5): p. 1025-33
    [PMID:11340179]
  5. Scheible WR,Eshed R,Richmond T,Delmer D,Somerville C
    Modifications of cellulose synthase confer resistance to isoxaben and thiazolidinone herbicides in Arabidopsis Ixr1 mutants.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(18): p. 10079-84
    [PMID:11517344]
  6. Desprez T, et al.
    Resistance against herbicide isoxaben and cellulose deficiency caused by distinct mutations in same cellulose synthase isoform CESA6.
    Plant Physiol., 2002. 128(2): p. 482-90
    [PMID:11842152]
  7. Burn JE,Hocart CH,Birch RJ,Cork AC,Williamson RE
    Functional analysis of the cellulose synthase genes CesA1, CesA2, and CesA3 in Arabidopsis.
    Plant Physiol., 2002. 129(2): p. 797-807
    [PMID:12068120]
  8. Ellis C,Karafyllidis I,Wasternack C,Turner JG
    The Arabidopsis mutant cev1 links cell wall signaling to jasmonate and ethylene responses.
    Plant Cell, 2002. 14(7): p. 1557-66
    [PMID:12119374]
  9. Ellis C,Karafyllidis I,Turner JG
    Constitutive activation of jasmonate signaling in an Arabidopsis mutant correlates with enhanced resistance to Erysiphe cichoracearum, Pseudomonas syringae, and Myzus persicae.
    Mol. Plant Microbe Interact., 2002. 15(10): p. 1025-30
    [PMID:12437300]
  10. Beeckman T, et al.
    Genetic complexity of cellulose synthase a gene function in Arabidopsis embryogenesis.
    Plant Physiol., 2002. 130(4): p. 1883-93
    [PMID:12481071]
  11. Caño-Delgado A,Penfield S,Smith C,Catley M,Bevan M
    Reduced cellulose synthesis invokes lignification and defense responses in Arabidopsis thaliana.
    Plant J., 2003. 34(3): p. 351-62
    [PMID:12713541]
  12. Roux F,Gasquez J,Reboud X
    The dominance of the herbicide resistance cost in several Arabidopsis thaliana mutant lines.
    Genetics, 2004. 166(1): p. 449-60
    [PMID:15020435]
  13. Nühse TS,Stensballe A,Jensen ON,Peck SC
    Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.
    Plant Cell, 2004. 16(9): p. 2394-405
    [PMID:15308754]
  14. Djerbi S,Lindskog M,Arvestad L,Sterky F,Teeri TT
    The genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes.
    Planta, 2005. 221(5): p. 739-46
    [PMID:15940463]
  15. Roux F,Camilleri C,Giancola S,Brunel D,Reboud X
    Epistatic interactions among herbicide resistances in Arabidopsis thaliana: the fitness cost of multiresistance.
    Genetics, 2005. 171(3): p. 1277-88
    [PMID:16020787]
  16. Giancola S, et al.
    Utilization of the three high-throughput SNP genotyping methods, the GOOD assay, Amplifluor and TaqMan, in diploid and polyploid plants.
    Theor. Appl. Genet., 2006. 112(6): p. 1115-24
    [PMID:16453133]
  17. Wang J,Howles PA,Cork AH,Birch RJ,Williamson RE
    Chimeric proteins suggest that the catalytic and/or C-terminal domains give CesA1 and CesA3 access to their specific sites in the cellulose synthase of primary walls.
    Plant Physiol., 2006. 142(2): p. 685-95
    [PMID:16891551]
  18. Bosca S, et al.
    Interactions between MUR10/CesA7-dependent secondary cellulose biosynthesis and primary cell wall structure.
    Plant Physiol., 2006. 142(4): p. 1353-63
    [PMID:17041031]
  19. Zarate SI,Kempema LA,Walling LL
    Silverleaf whitefly induces salicylic acid defenses and suppresses effectual jasmonic acid defenses.
    Plant Physiol., 2007. 143(2): p. 866-75
    [PMID:17189328]
  20. Taylor NG
    Identification of cellulose synthase AtCesA7 (IRX3) in vivo phosphorylation sites--a potential role in regulating protein degradation.
    Plant Mol. Biol., 2007. 64(1-2): p. 161-71
    [PMID:17427041]
  21. Persson S, et al.
    Genetic evidence for three unique components in primary cell-wall cellulose synthase complexes in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2007. 104(39): p. 15566-71
    [PMID:17878302]
  22. Desprez T, et al.
    Organization of cellulose synthase complexes involved in primary cell wall synthesis in Arabidopsis thaliana.
    Proc. Natl. Acad. Sci. U.S.A., 2007. 104(39): p. 15572-7
    [PMID:17878303]
  23. Adams-Phillips L, et al.
    Discovery of ADP-ribosylation and other plant defense pathway elements through expression profiling of four different Arabidopsis-Pseudomonas R-avr interactions.
    Mol. Plant Microbe Interact., 2008. 21(5): p. 646-57
    [PMID:18393624]
  24. Wang J,Elliott JE,Williamson RE
    Features of the primary wall CESA complex in wild type and cellulose-deficient mutants of Arabidopsis thaliana.
    J. Exp. Bot., 2008. 59(10): p. 2627-37
    [PMID:18495638]
  25. Bischoff V,Cookson SJ,Wu S,Scheible WR
    Thaxtomin A affects CESA-complex density, expression of cell wall genes, cell wall composition, and causes ectopic lignification in Arabidopsis thaliana seedlings.
    J. Exp. Bot., 2009. 60(3): p. 955-65
    [PMID:19269997]
  26. Farquharson KL
    Cortical microtubules regulate the insertion of cellulose synthase complexes in the plasma membrane.
    Plant Cell, 2009. 21(4): p. 1028
    [PMID:19376929]
  27. Crowell EF, et al.
    Pausing of Golgi bodies on microtubules regulates secretion of cellulose synthase complexes in Arabidopsis.
    Plant Cell, 2009. 21(4): p. 1141-54
    [PMID:19376932]
  28. Daras G, et al.
    The thanatos mutation in Arabidopsis thaliana cellulose synthase 3 (AtCesA3) has a dominant-negative effect on cellulose synthesis and plant growth.
    New Phytol., 2009. 184(1): p. 114-26
    [PMID:19645738]
  29. Betancur L, et al.
    Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber.
    J Integr Plant Biol, 2010. 52(2): p. 205-20
    [PMID:20377682]
  30. Gu Y, et al.
    Identification of a cellulose synthase-associated protein required for cellulose biosynthesis.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(29): p. 12866-71
    [PMID:20616083]
  31. Chan J, et al.
    The rotation of cellulose synthase trajectories is microtubule dependent and influences the texture of epidermal cell walls in Arabidopsis hypocotyls.
    J. Cell. Sci., 2010. 123(Pt 20): p. 3490-5
    [PMID:20876662]
  32. Bischoff V, et al.
    Phytochrome regulation of cellulose synthesis in Arabidopsis.
    Curr. Biol., 2011. 21(21): p. 1822-7
    [PMID:22036185]
  33. Hossain Z, et al.
    The translation elongation factor eEF-1Bβ1 is involved in cell wall biosynthesis and plant development in Arabidopsis thaliana.
    PLoS ONE, 2012. 7(1): p. e30425
    [PMID:22272350]
  34. Harris DM, et al.
    Cellulose microfibril crystallinity is reduced by mutating C-terminal transmembrane region residues CESA1A903V and CESA3T942I of cellulose synthase.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(11): p. 4098-103
    [PMID:22375033]
  35. Pysh L,Alexander N,Swatzyna L,Harbert R
    Four alleles of AtCESA3 form an allelic series with respect to root phenotype in Arabidopsis thaliana.
    Physiol Plant, 2012. 144(4): p. 369-81
    [PMID:22514801]
  36. Carroll A, et al.
    Complexes with mixed primary and secondary cellulose synthases are functional in Arabidopsis plants.
    Plant Physiol., 2012. 160(2): p. 726-37
    [PMID:22926318]
  37. Li S,Lei L,Gu Y
    Functional analysis of complexes with mixed primary and secondary cellulose synthases.
    Plant Signal Behav, 2013. 8(3): p. e23179
    [PMID:23299322]
  38. Sahoo DK,Stork J,DeBolt S,Maiti IB
    Manipulating cellulose biosynthesis by expression of mutant Arabidopsis proM24::CESA3(ixr1-2) gene in transgenic tobacco.
    Plant Biotechnol. J., 2013. 11(3): p. 362-72
    [PMID:23527628]
  39. Hayes ML,Giang K,Berhane B,Mulligan RM
    Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains.
    J. Biol. Chem., 2013. 288(51): p. 36519-29
    [PMID:24194514]
  40. Lei L,Li S,Du J,Bashline L,Gu Y
    Cellulose synthase INTERACTIVE3 regulates cellulose biosynthesis in both a microtubule-dependent and microtubule-independent manner in Arabidopsis.
    Plant Cell, 2013. 25(12): p. 4912-23
    [PMID:24368796]
  41. Sahoo DK,Maiti IB
    Biomass derived from transgenic tobacco expressing the Arabidopsis CESA3ixr1-2 gene exhibits improved saccharification.
    Acta. Biol. Hung., 2014. 65(2): p. 189-204
    [PMID:24873912]
  42. Nikolovski N,Shliaha PV,Gatto L,Dupree P,Lilley KS
    Label-free protein quantification for plant Golgi protein localization and abundance.
    Plant Physiol., 2014. 166(2): p. 1033-43
    [PMID:25122472]
  43. Slabaugh E, et al.
    Computational and genetic evidence that different structural conformations of a non-catalytic region affect the function of plant cellulose synthase.
    J. Exp. Bot., 2014. 65(22): p. 6645-53
    [PMID:25262226]
  44. Gonneau M,Desprez T,Guillot A,Vernhettes S,Höfte H
    Catalytic subunit stoichiometry within the cellulose synthase complex.
    Plant Physiol., 2014. 166(4): p. 1709-12
    [PMID:25352273]
  45. Fujimoto M,Suda Y,Vernhettes S,Nakano A,Ueda T
    Phosphatidylinositol 3-kinase and 4-kinase have distinct roles in intracellular trafficking of cellulose synthase complexes in Arabidopsis thaliana.
    Plant Cell Physiol., 2015. 56(2): p. 287-98
    [PMID:25516570]
  46. Griffiths JS, et al.
    Unidirectional movement of cellulose synthase complexes in Arabidopsis seed coat epidermal cells deposit cellulose involved in mucilage extrusion, adherence, and ray formation.
    Plant Physiol., 2015. 168(2): p. 502-20
    [PMID:25926481]
  47. Endler A, et al.
    A Mechanism for Sustained Cellulose Synthesis during Salt Stress.
    Cell, 2015. 162(6): p. 1353-64
    [PMID:26343580]
  48. Pysh LD
    Two alleles of the AtCesA3 gene in Arabidopsis thaliana display intragenic complementation.
    Am. J. Bot., 2015. 102(9): p. 1434-41
    [PMID:26391708]
  49. Chen S, et al.
    Anisotropic Cell Expansion Is Affected through the Bidirectional Mobility of Cellulose Synthase Complexes and Phosphorylation at Two Critical Residues on CESA3.
    Plant Physiol., 2016. 171(1): p. 242-50
    [PMID:26969722]
  50. Zhang Y, et al.
    Golgi-localized STELLO proteins regulate the assembly and trafficking of cellulose synthase complexes in Arabidopsis.
    Nat Commun, 2016. 7: p. 11656
    [PMID:27277162]
  51. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  52. Li S, et al.
    Cellulose synthase complexes act in a concerted fashion to synthesize highly aggregated cellulose in secondary cell walls of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. 11348-11353
    [PMID:27647923]
  53. Yang W, et al.
    PhCESA3 silencing inhibits elongation and stimulates radial expansion in petunia.
    Sci Rep, 2017. 7: p. 41471
    [PMID:28150693]
  54. Hu H, et al.
    Three AtCesA6-like members enhance biomass production by distinctively promoting cell growth in Arabidopsis.
    Plant Biotechnol. J., 2018. 16(5): p. 976-988
    [PMID:28944540]
  55. Hill JL,Josephs C,Barnes WJ,Anderson CT,Tien M
    Longevity in vivo of primary cell wall cellulose synthases.
    Plant Mol. Biol., 2018. 96(3): p. 279-289
    [PMID:29388029]
  56. Hu H, et al.
    Cellulose Synthase Mutants Distinctively Affect Cell Growth and Cell Wall Integrity for Plant Biomass Production in Arabidopsis.
    Plant Cell Physiol., 2018. 59(6): p. 1144-1157
    [PMID:29514326]
  57. Turner SR,Somerville CR
    Collapsed xylem phenotype of Arabidopsis identifies mutants deficient in cellulose deposition in the secondary cell wall.
    Plant Cell, 1997. 9(5): p. 689-701
    [PMID:9165747]
  58. Arioli T, et al.
    Molecular analysis of cellulose biosynthesis in Arabidopsis.
    Science, 1998. 279(5351): p. 717-20
    [PMID:9445479]