PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001191.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 692aa    MW: 73905.8 Da    PI: 6.9933
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001191.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-06667690226
                                     -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                     k + Cr ++++G+Ck G++C + H+
  FANhyb_rscf00001191.1.g00001.1 667 KGRVCR-YYESGHCKKGASCDYLHP 690
                                     7789**.8899*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5082912.016193247IPR003169GYF domain
SMARTSM004444.1E-13194249IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.2E-14199246IPR003169GYF domain
SuperFamilySSF552773.4E-13199245IPR003169GYF domain
PfamPF022133.0E-12200239IPR003169GYF domain
PROSITE profilePS5010315.413665692IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5665691IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-6665690IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.38E-6666690IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MILWYNCWSL KAVALDWVDL IHIQVCTIYA TPELVSVMHD RTVTYFKECV EKLQLLKTPE  60
ERQRRLEETL EIHADPNMDP SYESEEDEDE GGDQRQDSYT RPTGSGFGRK GREPISPRRG  120
GSSLNDSWSG SRNFSNMNRD FGRSMSSKGI FNKVENSTGA GDIVNDTWGQ GRETPQTNHW  180
ENKQNISSLE TGSRSTQSVD PSGKVQGPFS MIQLRKWNNT GYFPPNLRVW KNTDTQEDSI  240
LVTDALVGKF QKDPSIPKAQ MVHDSHLMPA ISGKAQGAQL QQTSESQGGS WGAHEINSSA  300
GRGTPSSVEV PKYSSDGWGT TNFPSPTPSQ TPITGAKRQA YENNWSASPG GNGVVQSHAA  360
APNSLQMHGQ VNVSGPVLAN ASMKPLPDVQ NIVSNLQNLV QSVTSRTTAS DTRAWGSGTV  420
PGSESQPWGG DPSQKIEPNN ATNVPAQLPA HGYWPPTNNG TSSVNTGSSA GNFPAQGLSG  480
VPNSDAWRPP VPSNQSYIQP PALPQAPWLS SVPDNQSAVP RMGQESQNSG WGPVAGNSNM  540
AWGGPVPGNT NMNWVPPSQG PGWSASGQGP VRGNAVPSWA PPPGQGPPSV SANPGWAPPG  600
QGPALGNPNS GWSAPTANQT QNGDRFSNQR DRASHGGDSG FGGGKPWNRQ PSFGGGGGGG  660
SSRPPFKGRV CRYYESGHCK KGASCDYLHP DQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292436.10.0PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X1
TrEMBLA0A2P6PPY20.0A0A2P6PPY2_ROSCH; Putative chromatin regulator PHD family
STRINGXP_004292436.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.13e-71nucleic acid binding;zinc ion binding;DNA binding