PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001168.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 711aa    MW: 78479.9 Da    PI: 8.367
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001168.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.4e-23110211199
                                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                     f k+lt+sd+++ g +++p+ +a+++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv+++
  FANhyb_rscf00001168.1.g00004.1 110 FAKTLTQSDANNGGGFSVPRYCADTIfprldysADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQK 186
                                     89*********************999****996555555..8************************************* PP

                                     T--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +L +gD++vF   +++++ l+v+++r+
  FANhyb_rscf00001168.1.g00004.1 187 KLVAGDSIVFL--RSENGDLCVGIRRA 211
                                     ***********..4478889****996 PP
2Auxin_resp113.22.5e-37284367183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSk 78 
                                     aa+ a+++++FevvY+Prast+eF+vk++ v++a++v+++ GmRfkmafeted+s++++ +Gt+++v+  d +rWpnS+
  FANhyb_rscf00001168.1.g00004.1 284 AASLAAKGQPFEVVYYPRASTPEFCVKASAVRAAVRVQWCSGMRFKMAFETEDCSRISWfMGTIASVQVNDKIRWPNSP 362
                                     688999************************************************************************* PP

                      Auxin_resp  79 WrsLk 83 
                                     Wr+L+
  FANhyb_rscf00001168.1.g00004.1 363 WRVLQ 367
                                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-38100213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.19E-28106212IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-21109210No hitNo description
SMARTSM010194.9E-22110212IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084110212IPR003340B3 DNA binding domain
PfamPF023621.0E-21110211IPR003340B3 DNA binding domain
PfamPF065076.2E-33284367IPR010525Auxin response factor
PROSITE profilePS5174517.224599679IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MKEMEKTLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQTHVDFPAS VRIPSLILCR  60
VAGIRYMADP ETDEVFARIR LVPSETNELY NDEGPVDSDG SDNQEKPSSF AKTLTQSDAN  120
NGGGFSVPRY CADTIFPRLD YSADPPVQTV IAKDVHGEVW KFRHIYRGTP RRHLLTTGWS  180
TFVNQKKLVA GDSIVFLRSE NGDLCVGIRR AKRGLLEGSP ESVSAASGWN HGRSGGPLYS  240
GFSVFLKEEE SKMGRNGFGN SSESGNVRGG RGGGRVRPEA VVEAASLAAK GQPFEVVYYP  300
RASTPEFCVK ASAVRAAVRV QWCSGMRFKM AFETEDCSRI SWFMGTIASV QVNDKIRWPN  360
SPWRVLQVTW DEPDLLQNVK CVSPWLIELV SNFPIIHMAP FSPPRKKLRI PQHPDFTLDG  420
QLTLPSFSGN PLGSSSPMCC LPDNTPAGIQ GARHAQLRIS LTNLHFNSKL QSGLFSSSFQ  480
RFDQNSRIPN GIRNGDTNSN ESLSCSLTMG NSIQNLEKSD NVKKHQFLLF GQPILTEQQM  540
SRSCSSDAVS QVLAGKNLKD ENQGRKRFLS VGSDSALEHW GSLEKSALNK ELHALDLDTG  600
HCKVFMESED VGRTLDLSAL GSYDELYRRL TIMFGLEKPE MLSHVLYRDP TGVVKQTGDE  660
PFGIFKKAAK RLTILTRPAN ETIGRTWIRG MENAGNGLGA SNKTGPLSIF A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-75739350393Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459440.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2P6QH970.0A0A2P6QH97_ROSCH; Auxin response factor
STRINGXP_004293136.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]