PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001150.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 1018aa    MW: 115410 Da    PI: 7.7775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001150.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.61.4e-2049657449127
                             NAM  49 kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmhey 126
                                     kk++++++ew++Fs+ + k+ +g+ +nrat++g+Wk tg ++e++++ +++l+g k+ L+fy+g+ ++g+kt Wv+hey
  FANhyb_rscf00001150.1.g00006.1 496 KKIRSDDEEWFYFSRPNYKT-KGNSRNRATERGFWKITGVEREIKARrSKALIGKKRPLTFYTGKVRNGQKTGWVIHEY 573
                                     37778999*****9998875.79999*******************9856667*************************** PP

                             NAM 127 r 127
                                      
  FANhyb_rscf00001150.1.g00006.1 574 Y 574
                                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF562197.07E-2540276IPR005135Endonuclease/exonuclease/phosphatase
PfamPF033724.4E-1347314IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:3.60.10.101.2E-678259IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:1.10.238.103.1E-6330405IPR011992EF-hand domain pair
SuperFamilySSF474739.58E-8343406IPR011992EF-hand domain pair
PROSITE profilePS502228.237376411IPR002048EF-hand domain
PROSITE patternPS000180389401IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5100526.456451597IPR003441NAC domain
PfamPF023659.7E-11485574IPR003441NAC domain
SuperFamilySSF1019411.44E-23499597IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1018 aa     Download sequence    Send to blast
MVANRNMRDK DSNPNVHERQ SFNGSFVSME EPKPETRAGP GLISCTTFNI LAPIYKRLDQ  60
QNQGLRESQF SSFWVTRNQK ILDWLLYESS SIICLQEFWV GNEEFVNMYL KRLGDAGYST  120
FKLARTNNRG DVKFHDFKIL LPFQLIQVLY TGLLTAVRSD CFRVLNYREL HFNDFGDRVA  180
QLLHVQLTAP FSQIQRGNLQ QEILIVNTHL LFPHDSSLCI VRLHQVYKIL QFVEAYQNEN  240
KLNHMPIILC GDWNGSKRGH VYKFLRSQGF ESTYDTAHQY TDNDAHKWVS HRNHRGNICG  300
VDFIWLCNPN KSRKPLKTSW CEAVFGILRR RLRKASMADN DAFAFLKGDN HGDFITSSAF  360
CQALRQVNLI GHPSGLGFQE TRDLWIQADT DANGVLDYEE FKNMIWSCTG SDQKESLTGS  420
RKESEEDTKE ALGFKVKNAV LYPSEAEKGI WPENYTLSDH ARLTVEPCIA DRDQSLLGSR  480
FTSVVKHGLR KMKRKKKIRS DDEEWFYFSR PNYKTKGNSR NRATERGFWK ITGVEREIKA  540
RRSKALIGKK RPLTFYTGKV RNGQKTGWVI HEYYIPENLL PNAVRQRDFV LCRLKKKDES  600
ADNEACGQGE VCQTSTDNLS DFQNLVANLG RPSSPEDLQI TLQENTRPEE IFATLFSSDE  660
PPDYFASILG GSFLHENAGS DDHLDQQSAF RHEDSDEGDF FLEDRPRHYS LQPLKRAIVD  720
VATLYNVLAT RIVMKKASSV NVAANLPLNI GHVRSVNMEE SEYEPKYVLQ AGGSSSDTLS  780
SALVTYKSYL NETGGRKGEM ITGGAELQSG PQLPLRPDDY ITQAKVRNMT AQSYQGQIKQ  840
GFKQVKYTSM VPEKALDPDK PWRNDEQKGM KTKQIGTTIS DWKSSFIVWK ESPLSLGSCP  900
PVVYIRNMIG GLAADEAAGL ATSLKPTRTT HGNAGEESND AQESRLLHLS KFLEDGDGGE  960
EGEVVPFVVT LITSTHNANI VCKGFGNLGL ACCSEKGRAV RLVDHCYGFG HWDHHCIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-1350260170169NO APICAL MERISTEM PROTEIN
1ut4_B4e-1350260170169NO APICAL MERISTEM PROTEIN
1ut7_A4e-1350260170169NO APICAL MERISTEM PROTEIN
1ut7_B4e-1350260170169NO APICAL MERISTEM PROTEIN
3swm_A5e-1350260173172NAC domain-containing protein 19
3swm_B5e-1350260173172NAC domain-containing protein 19
3swm_C5e-1350260173172NAC domain-containing protein 19
3swm_D5e-1350260173172NAC domain-containing protein 19
3swp_A5e-1350260173172NAC domain-containing protein 19
3swp_B5e-1350260173172NAC domain-containing protein 19
3swp_C5e-1350260173172NAC domain-containing protein 19
3swp_D5e-1350260173172NAC domain-containing protein 19
4dul_A4e-1350260170169NAC domain-containing protein 19
4dul_B4e-1350260170169NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328333RRRLRK
2488495LRKMKRKK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF190722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-17NAC domain containing protein 58