PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001089.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 432aa    MW: 47516 Da    PI: 7.2625
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001089.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.2e-11230279554
                                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                                     kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+k
  FANhyb_rscf00001089.1.g00002.1 230 KRAKRIWANRQSAARSKERKMRYIAELEQKVQTLQTEATSLSAQLTLLQK 279
                                     9*******************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-8226282IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.082228279IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-11230283No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-10230279No hitNo description
PfamPF001708.4E-10230279IPR004827Basic-leucine zipper domain
CDDcd147034.09E-25231282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDKDKSPAHG GGLPPPSGRY SSLLPTGTTY NVKSEPSSSS SFPPLASGAT AEPGHFGHGM  60
SSESNHFSHD ISRMPDYPPR KLGHRRAHSE IVTLPDDISF DSDLGVVGGA DGPSFSDETE  120
EDLLSMYLDM DKFNSSSATS SSFQVGEPSA SAPQAAPAFA PATRALTTDN ISICTHERPR  180
VRHQHSQSMD GSTTIKPEML VASSEEMSAV DSKKALSATK LAELALVDPK RAKRIWANRQ  240
SAARSKERKM RYIAELEQKV QTLQTEATSL SAQLTLLQKL HIFIPYYVPP NGLFPTHANF  300
HRFIALNDAL KEEIQHLKVL TGQAMPNGGP MMNFASFSAG AGAAPAPGQQ FYPNNQAMHT  360
LLTAQQFQQL QIHSQKQQHQ LHQLQQQHMQ QQQQQLHQQQ QQQQQQQQQQ QQQELSGDMQ  420
IGATMHSPSQ KR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309615.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-130POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2P6S1R10.0A0A2P6S1R1_ROSCH; Putative transcription factor bZIP family
STRINGXP_004309615.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55173249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-115bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]