PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001085.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CAMTA
Protein Properties Length: 1205aa    MW: 135474 Da    PI: 5.582
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001085.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11734.1e-54181323116
                            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvev 80 
                                     +e ++rwlk+ e++ iL+n++k+++t e++++p sgsl+L+n++++r+fr+DG++w+kk+dg+tv E+he+LKvg+ve+
  FANhyb_rscf00001085.1.g00001.1  18 QEaQSRWLKPAEVLFILQNHDKYKVTPEPPQQPVSGSLFLFNKRILRFFRRDGHNWRKKRDGRTVGEAHERLKVGNVET 96 
                                     5669*************************************************************************** PP

                            CG-1  81 lycyYahseenptfqrrcywlLeeelekivlvhyle 116
                                     l+cyYah+e+n++fqrr+yw+L+ ++++ivlvhy+e
  FANhyb_rscf00001085.1.g00001.1  97 LNCYYAHGEDNSNFQRRSYWMLDPAYDHIVLVHYRE 132
                                     **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.59113139IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-7516134IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-4719132IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.4E-4464551IPR013783Immunoglobulin-like fold
PfamPF018333.0E-5466550IPR002909IPT domain
SuperFamilySSF812964.55E-14466551IPR014756Immunoglobulin E-set
SuperFamilySSF484033.89E-21660713IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502979.967662704IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.6E-22664709IPR020683Ankyrin repeat-containing domain
CDDcd002042.57E-4667704No hitNo description
SMARTSM002484200695738IPR002110Ankyrin repeat
PROSITE profilePS5029716.812837929IPR020683Ankyrin repeat-containing domain
CDDcd002045.93E-14842929No hitNo description
SuperFamilySSF484033.89E-21842930IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.6E-22852931IPR020683Ankyrin repeat-containing domain
PfamPF127969.2E-8852930IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.274870902IPR002110Ankyrin repeat
SMARTSM002480.0013870899IPR002110Ankyrin repeat
SMARTSM002482100909938IPR002110Ankyrin repeat
SMARTSM00015189871009IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.1819881017IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.15E-610341094IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000154.510421064IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.8410431072IPR000048IQ motif, EF-hand binding site
PfamPF006120.02610451063IPR000048IQ motif, EF-hand binding site
SMARTSM000152.1E-410651087IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.24910661090IPR000048IQ motif, EF-hand binding site
PfamPF006128.0E-510681087IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1205 aa     Download sequence    Send to blast
MYYFVYEVSG YDIKELFQEA QSRWLKPAEV LFILQNHDKY KVTPEPPQQP VSGSLFLFNK  60
RILRFFRRDG HNWRKKRDGR TVGEAHERLK VGNVETLNCY YAHGEDNSNF QRRSYWMLDP  120
AYDHIVLVHY REISEVKPSP GSFIQSPVSS SSLSQSPISN TTQHPGFVSM ISELYEPYTS  180
PGSVEVSSDL VIKKNGRESV DNLYRTGESD SSSKADVSQA LRRLEEQLSL NDDSFNEFVD  240
DNPNGSDIPE YSGDQFTAFH GQEHILHDEF YSGYSLMQGN ADNSSDILDH HSDIVSQDPC  300
TSFDGPGHIV NDQFYSARSE MQSNVDLSGK HHQFNDHEFS DGNKESASWK EVMNSSKTSS  360
IVKSPETGLS TLDRNPLMHC YYQLQQEKLY SSLTGPNGVF EYPSDNLYML PASLSRPQEV  420
ESFKISPYSS AIERHSDYFT SFFEQGHMGN LDSEISLTVA QKQKFTIREI SPEWGDANEP  480
TKIILICRTT KYLIIESAWT CMFGNVEVPA QIIQEGVISC VAPPHLPGKV TICITSGNRE  540
SCSEVREFEY RVKSSSSTPN NSPPKESGRS AEELLLLVRF AQILLSDSSV QNRDTVDSEF  600
VRKSKADDDT WGSVIEALLV GSGSSSSTIY WLLEEFLKDK LQQWFSSRSL GLDLTDCSLS  660
RKEQGMIHMI AGLGFEWALN PLLNLGVNIN FRDINGWTAL HWAAVEATQP WTMGFSLGWV  720
FRLTSLEMIY DATDRVGRKR KGKKKDEELT FGIRFAQILL SDSSVQNRDT VESEFVRKSK  780
ADDDTWGSVI EALLVGSGSS SSTIYWLLEE FLKDKLQQWL SSRSQGLDLT DCSLSRKEQG  840
MIHMIAGLGF EWALNPLLNL GVNINFRDIN GWTALHWAAR FGREKMVAVL VASGASAGAV  900
TDPSCQDPIG KTPASIAAIH GHKGLAGYLS EVALTSHLSS LTLEESEISR GCAELEAEIT  960
VNSISKSNLE TNEDQAPLKN TLAAVRNAAQ AAARIQSAFR AHSFRRRQHK EAGVTIDDYG  1020
ISSEDIQGLS ALSKLTFRNP RDYNSAALSI QKKYRGWKGR KDFLALRQKV VKIQAYVRGY  1080
QVRKHYKVIC WAVGILDKVV LRWRRKGVGL RGFRNEAEST EESEDEDILK VFRKQKVDGA  1140
IDEAVSRVLS MVESPEAREQ YQRMLERYHQ AKAELGSTSG EAGAPNSLSL EDFVNMEDID  1200
MYQLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1737745RKRKGKKKD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457493.10.0PREDICTED: calmodulin-binding transcription activator 4
SwissprotQ9FYG21e-180CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A2P6R0B90.0A0A2P6R0B9_ROSCH; Putative transcription factor CG1-CAMTA family
STRINGXP_004310223.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-152Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]