PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001009.1.g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29856.2 Da PI: 9.8842 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.4 | 9.8e-17 | 11 | 103 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 ffk+ ++++ l++p kf +++ +++ e+ tl l+ +s sW v++ ++ g ++l++GW++F k+n L + FANhyb_rscf00001009.1.g00002.1 11 FFKII--ITGFNTDDLRIPPKFRRHMlnELS--ETATLELRGSSKCSWIVQV--SQIEGDIYLKDGWQKFIKDNSLGDY 83 66766..66889999*******866665444..667999*************..999999******************* PP -EEEEEE-SSSEE..EEEEE-S CS B3 78 DfvvFkldgrsefelvvkvfrk 99 +f+vF++++ + f ++ +f++ FANhyb_rscf00001009.1.g00002.1 84 EFLVFRYERAMHF--TIDIFDE 103 *******998999..9999886 PP | |||||||
2 | B3 | 55.3 | 1.2e-17 | 181 | 257 | 15 | 97 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++++p +f ++h +++ +++++++g++W+vk+ ++ ++ l++GW eF +an++k gD+++Fkl++r ++lv FANhyb_rscf00001009.1.g00002.1 181 NVSVPTDFSKKHL--PQGYYSIVVKNSKGQKWKVKV--VRSCTSVKLSGGWAEFRRANQIKCGDICTFKLVER--KTLV 253 5899*****9994..235568***************..9******************************9875..5558 PP EEEE CS B3 94 vkvf 97 v+v+ FANhyb_rscf00001009.1.g00002.1 254 VHVV 257 8886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-21 | 5 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-19 | 6 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.64E-14 | 9 | 102 | No hit | No description |
PROSITE profile | PS50863 | 11.829 | 9 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-14 | 11 | 103 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-11 | 11 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-18 | 165 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-19 | 165 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.606 | 167 | 259 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.59E-14 | 169 | 256 | No hit | No description |
SMART | SM01019 | 2.8E-7 | 171 | 259 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.5E-16 | 180 | 257 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MQRRASKEPT FFKIIITGFN TDDLRIPPKF RRHMLNELSE TATLELRGSS KCSWIVQVSQ 60 IEGDIYLKDG WQKFIKDNSL GDYEFLVFRY ERAMHFTIDI FDETGCMRNN FLKKSTGADN 120 TKRPRGRARK YNHSAAVENI RSCQSTELIE IKEEEIEEEA ATSHNSGFPS FASIMLNHLY 180 NVSVPTDFSK KHLPQGYYSI VVKNSKGQKW KVKVVRSCTS VKLSGGWAEF RRANQIKCGD 240 ICTFKLVERK TLVVHVVPK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290347.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like | ||||
TrEMBL | A0A2P6PMW2 | 1e-135 | A0A2P6PMW2_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004290347.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14202 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 1e-19 | B3 family protein |