PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000955.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 184aa MW: 20857.7 Da PI: 8.323 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.7 | 3.2e-07 | 79 | 146 | 14 | 88 |
FAR1 14 vrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 v++++sk + + + C + g +++ e+++r++++ ++C k+ +k+ +g+w+v+ + l HnH+ FANhyb_rscf00000955.1.g00001.1 79 VVIKRSKPN------RNVVMGCDRGGCYRTRIAV-ENKKRNSSSRLINCPFKILGRKKGEGVWKVEMITLLHNHK 146 444433333......4566788888888888777.78888999999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-5 | 76 | 146 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEEEPLNDAE LQKVASDNME EELQFDHSLN DIEGLPVGGN EEIFDVSDGF LSLSTKVYDN 60 RDDLVSDVRK IGFSQGYVVV IKRSKPNRNV VMGCDRGGCY RTRIAVENKK RNSSSRLINC 120 PFKILGRKKG EGVWKVEMIT LLHNHKPSTD MAGHPYCRRF SKEEALQVKQ MNRAGVKPRQ 180 ILSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011462913.1 | 1e-128 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_011462914.1 | 1e-128 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2P6QP23 | 3e-75 | A0A2P6QP23_ROSCH; Putative transcription factor interactor and regulator CCHC(Zn) family | ||||
STRING | XP_008235823.1 | 7e-52 | (Prunus mume) | ||||
STRING | XP_008245449.1 | 8e-53 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13278 | 3 | 4 |