PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000929.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-X1
Protein Properties Length: 1190aa    MW: 127832 Da    PI: 8.0696
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000929.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.91.8e-07362380119
                        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                     CG+H+C+++CH GpC+pC+
  FANhyb_rscf00000929.1.g00006.1 362 CGRHRCERKCHVGPCDPCQ 380
                                     ******************6 PP
2zf-NF-X119.91.6e-06426443118
                        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                     CG+H C+++CH+GpC++C
  FANhyb_rscf00000929.1.g00006.1 426 CGNHVCSEICHPGPCGEC 443
                                     ****************** PP
3zf-NF-X122.82e-07484501118
                        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                     CG H+Cq++CH+G+CppC
  FANhyb_rscf00000929.1.g00006.1 484 CGVHQCQQICHTGDCPPC 501
                                     ****************** PP
4zf-NF-X117.21.1e-05580597118
                        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                     CG+H+C++lCH G CppC
  FANhyb_rscf00000929.1.g00006.1 580 CGQHSCESLCHSGHCPPC 597
                                     ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.89E-7187254No hitNo description
PROSITE profilePS500168.778192253IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.48195251IPR001841Zinc finger, RING-type
PROSITE patternPS013590195250IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.10E-4284345No hitNo description
SMARTSM004380.17307325IPR000967Zinc finger, NF-X1-type
PfamPF014225.9309324IPR000967Zinc finger, NF-X1-type
CDDcd060087.02E-11352398No hitNo description
PfamPF014226.6E-6362379IPR000967Zinc finger, NF-X1-type
SMARTSM004386.5E-5362381IPR000967Zinc finger, NF-X1-type
CDDcd060081.29E-10416459No hitNo description
PfamPF014226.8E-4426443IPR000967Zinc finger, NF-X1-type
SMARTSM004385.0E-5426445IPR000967Zinc finger, NF-X1-type
CDDcd060081.98E-13474520No hitNo description
PfamPF014226.4E-6484501IPR000967Zinc finger, NF-X1-type
SMARTSM004388.8E-5484503IPR000967Zinc finger, NF-X1-type
CDDcd060081.44E-4532591No hitNo description
PfamPF0142220542553IPR000967Zinc finger, NF-X1-type
CDDcd060082.29E-8570613No hitNo description
PfamPF014221.1E-4580597IPR000967Zinc finger, NF-X1-type
SMARTSM004380.002580599IPR000967Zinc finger, NF-X1-type
CDDcd060085.30E-6627675No hitNo description
PfamPF014223.6637654IPR000967Zinc finger, NF-X1-type
SMARTSM004380.036637655IPR000967Zinc finger, NF-X1-type
PfamPF014220.097690705IPR000967Zinc finger, NF-X1-type
SMARTSM004380.64690720IPR000967Zinc finger, NF-X1-type
CDDcd060088.04E-5718767No hitNo description
PfamPF0142265722744IPR000967Zinc finger, NF-X1-type
SMARTSM004380.1729750IPR000967Zinc finger, NF-X1-type
PfamPF014241.9E-5861926IPR001374R3H domain
Gene3DG3DSA:3.30.70.3301.3E-59641017IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1190 aa     Download sequence    Send to blast
MASQVRSERR DNNRSRNPAQ PRWVPRGSNP TTAAVNPPPP SFSLNLPNGN ANVPAAGESR  60
QHRGGHGGNG QPNHVSAPGE SWQHRGGYNG NGGQLNQVSG SSESWQQRGG HNGNGGQSNY  120
SFTPSDGRQH RGGHNGIVGQ FNHSSVPSES RRGGHNGNGG QSNQSSTLSE NRQHRGGHHG  180
SREIQDKLTK GTVECMICYD MVRRSAPVWS CSSCYSIFHL NCIKKWARAP TSIDMSAGKN  240
QGFNWRCPGC QSVQLTSSKE IRYVCFCGKR TDPPSDLYLT PHSCGEHCGK PLEKEVAGRG  300
ISKDDLCPHM CVLQCHPGPC PPCKAFAPPR LCPCGKKTIT TRCSDRTSVL TCGNQCSKLL  360
DCGRHRCERK CHVGPCDPCQ VPFNASCFCL KKVEVVLCEE MTVKGEVKAE DGVFSCSSSC  420
GKKLSCGNHV CSEICHPGPC GECNLMPQNV KTCHCGKTSL QEERQSCLDP IPTCSQICEK  480
TLPCGVHQCQ QICHTGDCPP CLVKVTQKCR CESTSRNVEC CNTTMENQKF TCDKPCGRKK  540
NCGRHRCSER CCPLSNSNNQ LSGDWDPHLC SMPCGKKLRC GQHSCESLCH SGHCPPCLDT  600
IFTDLTCACG RTSIPPPLPC GTPPPSCQLP CSVPQPCGHS SSHSCHFGDC PPCSVPVPKE  660
CIGGHVVLRN IPCGSKDIKC NKPCGKIRQC GMHACGRTCH PPPCESSSSA EVVSKSSCGQ  720
ICGAPRRDCR HTCTAPCHPY ASCPDARCDF LVTITCSCGR ITANVPCDSG GSNASFNAGT  780
VFEASIIQKL PVPLQPVEAT NKKVPLGQRK LMCDDECAKL ERKRVLADAF DIVPPNLDAL  840
HFGETNVTSE LLSDLFRRDP KWVLSVEERC KQLVLGKSKG ATSGLRVHVF CPMLKEKRDV  900
VRVIADRWKL AVQAAGWEPK RFIVVHATPK SKVPARVLGV KGTTTVNTSQ PPAFDHLVDM  960
DPRLVVSFPD LPRDADISAL VLRFGGECEL VWLNDKNALA VFNDPARAAT AMRRLDNGTL  1020
YHGAIAVLSV ASSGSNAWGG VGIAKEGAYT ALKGNAWKKA VIRESSWRED SWGDEELSGG  1080
SADVQASVWK KEAPIAASLN RWSVLDSEVP LGSSSVSPTV EDSGKHTSAG VSPTVEDSGK  1140
HTAAGLISMV ESNASGSTPS NASSSTSVGQ LGGSIAETSE VVDDWEKAYE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464477.10.0PREDICTED: LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2P6P1Q70.0A0A2P6P1Q7_ROSCH; Putative chromatin regulator PHD family
STRINGXP_004299509.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1