PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000875.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 881aa MW: 99726.2 Da PI: 7.5943

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000875.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.7	2.1e-14	59	194	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................................. 47 fY Y+ GF++rk+k +++++ i++r +vCs+eg+r++ k++ FANhyb_rscf00000875.1.g00004.1 59 FYLYYSIAKGFNMRKRKLDWNSKKTMIIRRVLVCSREGERRNPKESnvceedddsaledglfhknvkgrkdkalrisvv 137 9******************99**************999999**************************** PP FAR1 48 .............tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++ +++tr +r++C a+++v+ ++ +g + +++ +eHnH+l+ FANhyb_rscf00000875.1.g00004.1 138 ndsdsscsgkknaKTLTSKTRRLSRVHCGAQFTVNFDSeRGGFAASSFTTEHNHPLT 194 ****99988888899*************9999*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.2E-12	59	194	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-31	316	410	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.126	595	633	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-6	608	635	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MDSSGIGSDD GTELSQSIDG SHWSRNDQCT MFNGKPYRDL TLDDLKDVVF KSVAEADTFY 60 LYYSIAKGFN MRKRKLDWNS KKTMIIRRVL VCSREGERRN PKESNVCEED DDSALEDGLF 120 HKNVKGRKDK ALRISVVNDS DSSCSGKKNA KTLTSKTRRL SRVHCGAQFT VNFDSERGGF 180 AASSFTTEHN HPLTQRAHTP FMKKNRGLKE HDMAQVDSLR KVSVGTSCAY EFLVHQAGGH 240 EFVGFTERDL YNRVQRENSK LMIDGDAQCC ITWMNMKATR DPNFYSVFSV DEKGRLANMF 300 WRDGQSYTDY CAYGDVLVFD STYKTNMYGK PLVVFVGSNN HRATVMFGCA LLVDETEETY 360 NWVLTAFLAS MKQKKPVSVI TDSDEAMRKA LDNVMPEARQ RLCAWHVGKN AVSHLRDANT 420 RADFFHHIFA GLTIEEWELS WEYFVAMNRL EDNSWINGMY NKRHRWAEAF FRDEFYGGIS 480 STQRCEGMHR ILKVGIGSCM TMSEMMARME KSVARLRNRG LYDDYMSDQF SPVLKTHMLE 540 LEEDIGRVFT HDIYLLMRDQ IFFEKKFSVA GRVVNEESGA SAVRITQYGK PGRIWNVDFQ 600 PDMTNPTFTC SCKLFESDGI PCCHIFCVMK AENMTKLPPS LVKKRWTKEG ALTRKSESTV 660 DGKSVQLARY GELMSMCARI CHIASSSEEG YDGVKELLSR LTIESRNLPQ PAETDPKDPE 720 QDIDSTTGLH RNVIRDPVPC RSKGTKKDSG SGKGSKKKKT SKCSRCKQYG HNKSTCEKHG 780 MEGKKNVSIK SDTDDMGPQS SSIEGDLSTG ETSDMSVSSD DDVGDVETQK NCDGKLFHHL 840 EEARTFEFVS GEGNTRDASS RGSRGGEGGY FRHFRPFTES A

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MDSSGIGSDD GTELSQSIDG SHWSRNDQCT MFNGKPYRDL TLDDLKDVVF KSVAEADTFY  60
LYYSIAKGFN MRKRKLDWNS KKTMIIRRVL VCSREGERRN PKESNVCEED DDSALEDGLF  120
HKNVKGRKDK ALRISVVNDS DSSCSGKKNA KTLTSKTRRL SRVHCGAQFT VNFDSERGGF  180
AASSFTTEHN HPLTQRAHTP FMKKNRGLKE HDMAQVDSLR KVSVGTSCAY EFLVHQAGGH  240
EFVGFTERDL YNRVQRENSK LMIDGDAQCC ITWMNMKATR DPNFYSVFSV DEKGRLANMF  300
WRDGQSYTDY CAYGDVLVFD STYKTNMYGK PLVVFVGSNN HRATVMFGCA LLVDETEETY  360
NWVLTAFLAS MKQKKPVSVI TDSDEAMRKA LDNVMPEARQ RLCAWHVGKN AVSHLRDANT  420
RADFFHHIFA GLTIEEWELS WEYFVAMNRL EDNSWINGMY NKRHRWAEAF FRDEFYGGIS  480
STQRCEGMHR ILKVGIGSCM TMSEMMARME KSVARLRNRG LYDDYMSDQF SPVLKTHMLE  540
LEEDIGRVFT HDIYLLMRDQ IFFEKKFSVA GRVVNEESGA SAVRITQYGK PGRIWNVDFQ  600
PDMTNPTFTC SCKLFESDGI PCCHIFCVMK AENMTKLPPS LVKKRWTKEG ALTRKSESTV  660
DGKSVQLARY GELMSMCARI CHIASSSEEG YDGVKELLSR LTIESRNLPQ PAETDPKDPE  720
QDIDSTTGLH RNVIRDPVPC RSKGTKKDSG SGKGSKKKKT SKCSRCKQYG HNKSTCEKHG  780
MEGKKNVSIK SDTDDMGPQS SSIEGDLSTG ETSDMSVSSD DDVGDVETQK NCDGKLFHHL  840
EEARTFEFVS GEGNTRDASS RGSRGGEGGY FRHFRPFTES A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024195689.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2P6QC95	0.0	A0A2P6QC95_ROSCH; Putative transcription factor FAR family

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13896	2	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-78	FAR1-related sequence 5