PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000866.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 322aa    MW: 36092.5 Da    PI: 6.5606
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000866.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.5e-191461148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT+eEd++lv++++++G g+W++ ++  g++R++k+c++rw +yl
  FANhyb_rscf00000866.1.g00004.1 14 KGPWTPEEDQKLVQYIQEHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                                    79********************************************97 PP
2Myb_DNA-binding52.51.1e-1667112148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rg++++eE++ +++++ +lG++ W++Ia ++  gRt++++k++w+++l
  FANhyb_rscf00000866.1.g00004.1  67 RGNFSQEEEQTILHLHSLLGNK-WSAIATHLS-GRTDNEIKNFWNTHL 112
                                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.876961IPR017930Myb domain
SuperFamilySSF466898.63E-3211108IPR009057Homeodomain-like
SMARTSM007173.3E-161363IPR001005SANT/Myb domain
PfamPF002491.9E-181461IPR001005SANT/Myb domain
CDDcd001673.51E-131661No hitNo description
PROSITE profilePS5129426.23262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-2765117IPR009057Homeodomain-like
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002492.3E-1567112IPR001005SANT/Myb domain
CDDcd001671.28E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGKSHCCDES GLKKGPWTPE EDQKLVQYIQ EHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGNF SQEEEQTILH LHSLLGNKWS AIATHLSGRT DNEIKNFWNT HLKKKLIQMG  120
IDPMTHQPRT DLFSNLQDLL PLQYQSLDQH AATSLHDAAE AVAQLVKLQY LHQQYVLQSH  180
LLNTNVGSYD PPPPPIKENL PVLNSSHLVL ESPSSFSQPL HYGTLVPPHD NPQVPFSSFA  240
VPEIDPMVSS LSQAEKNPPA MYEYSPSFLQ YSSNIPTPLA DPLINNPGEA SCSTSSNGGM  300
RSSTSSSYWS ELLLEETKTN YD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-28121162105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-28121162105C-Myb DNA-Binding Domain
1msf_C1e-28121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300644.10.0PREDICTED: transcription factor MYB39
SwissprotQ9S9Z22e-93MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2P6PHK30.0A0A2P6PHK3_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004300644.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.19e-96myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]