PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000837.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 785aa    MW: 87138.2 Da    PI: 9.2166
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000837.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.8e-22145245198
                                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                     f+k+lt sd++++g +++ +k+a+++     +++ + +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L
  FANhyb_rscf00000837.1.g00001.1 145 FCKILTASDTSTHGGFSVLRKHANDClppldMNQATPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRL 223
                                     99*********************999****9555556679*************************************** PP

                                     -TT-EEEEEE-SSSEE..EEEEE- CS
                              B3  75 kegDfvvFkldgrsefelvvkvfr 98 
                                      +gD +vF +    ++el v+v+r
  FANhyb_rscf00000837.1.g00001.1 224 VAGDAFVFLRG--GNGELGVGVRR 245
                                     *********43..67888999987 PP
2Auxin_resp104.41.4e-34271350183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79 
                                     a+ha+ t++ F v+Y+Pr+  s+F+v ++k+++a+++k+svGmRfkm+fe+eds+err++Gt+vgv dl+p +W +SkW
  FANhyb_rscf00000837.1.g00001.1 271 ASHAVMTSTLFVVYYKPRT--SQFIVGLNKYLEAINNKFSVGMRFKMRFEGEDSPERRFTGTIVGVGDLSP-HWAESKW 346
                                     6899**************6..9*************************************************.******* PP

                      Auxin_resp  80 rsLk 83 
                                     rsLk
  FANhyb_rscf00000837.1.g00001.1 347 RSLK 350
                                     **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-39135274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-39138260IPR015300DNA-binding pseudobarrel domain
CDDcd100173.26E-19144245No hitNo description
PROSITE profilePS5086312.041145247IPR003340B3 DNA binding domain
SMARTSM010193.1E-20145247IPR003340B3 DNA binding domain
PfamPF023622.5E-20145245IPR003340B3 DNA binding domain
PfamPF065073.6E-32271350IPR010525Auxin response factor
PfamPF023091.1E-9562653IPR033389AUX/IAA domain
SuperFamilySSF542773.86E-11567648No hitNo description
PROSITE profilePS5174524.728572653IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MAHSQCDSSS VSRGGDTGYG SALYTELWKL CAGPLVDVPR IGERVFYFPQ GHMEQLEAST  60
NQELNPQIPR FNITSKILCQ VVNIQLLAER DTDEVYAQIT LLPEPDVSSF FSSLDSSLGW  120
YLQQSEPTSP DPCVPEPPTP ATCSFCKILT ASDTSTHGGF SVLRKHANDC LPPLDMNQAT  180
PTQELAAKDL HGYEWKFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGGNGELG  240
VGVRRLARQQ TPMPSSVISS QSMHLGVLAT ASHAVMTSTL FVVYYKPRTS QFIVGLNKYL  300
EAINNKFSVG MRFKMRFEGE DSPERRFTGT IVGVGDLSPH WAESKWRSLK VQWDEHATVP  360
RPDRVSPWEI EPFVASVPLN LAQPVLKSKR PKTVEIASSE ITTNSTASPF WLSGPRRQKD  420
SNGSGYSSSR ICAEGIWPSS PNVNVSLSLF ADSQEGNKNA TMGSMLPSFS SPSSKPSNGP  480
VHDQLETGKK FESSGFRLFG YDVPKAITAN LREKEPMFTT VCSGAKGPIL ATASELDQDP  540
NISKISKEQM QLISEVPPIE TQSKQGSTVS MRSRTKVHME GVAVGRAVDL TALKGYDDLI  600
DELEKMFEIK GELRPANKWA VVFTDDENDM MLLGDYQWQD FCRTVKKIFI FSSDHVQMLR  660
QGKLKSSALL SSLVLKEVQW KKGGKEVHKS SHSRPVRGSL APPRERYQTR GQTAQRLPSP  720
ELPPSAAIAG DPWPVGKLSS RAAIPLKGSL HLELVRKVVE EVERKDVRRL ERKRHPTDIR  780
LRPNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1662237318355Auxin response factor 1
4ldw_A1e-1662237318355Auxin response factor 1
4ldw_B1e-1662237318355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306655.10.0PREDICTED: auxin response factor 18
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2P6SIM70.0A0A2P6SIM7_ROSCH; Auxin response factor
STRINGXP_004306655.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9